Basic Information

Insect: Tetramorium immigrans
Gene Symbol: -
Assembly: GCA_011636585.1
Location: VBVO01009564.1:2-3177[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 2.3e-06 0.00029 21.7 1.3 1 23 54 76 54 76 0.99

2 22 7.3e-07 9.1e-05 23.3 1.2 1 23 82 105 82 105 0.95

3 22 1.3e-05 0.0017 19.3 0.7 1 23 111 133 111 133 0.98

4 22 4.6e-06 0.00057 20.8 1.1 1 23 139 161 139 161 0.98

5 22 4.7e-05 0.0058 17.6 1.4 1 23 167 189 167 189 0.96

6 22 8.8e-06 0.0011 19.9 0.8 1 23 195 217 195 217 0.95

7 22 6.5e-06 0.00082 20.3 1.4 1 23 223 246 223 246 0.97

8 22 0.00017 0.022 15.8 6.4 1 21 345 365 345 369 0.92

9 22 0.35 44 5.4 0.7 1 23 430 453 430 453 0.93

10 22 0.00013 0.016 16.2 1.7 1 23 483 505 483 505 0.98

11 22 6e-06 0.00075 20.4 1.9 1 23 511 534 511 534 0.97

12 22 7.4e-06 0.00092 20.1 0.4 2 23 541 562 540 562 0.97

13 22 1.4e-07 1.8e-05 25.5 1.1 1 23 568 590 568 590 0.99

14 22 3.9e-05 0.0049 17.8 2.2 1 23 596 618 596 618 0.98

15 22 0.37 46 5.3 0.1 1 11 624 634 624 638 0.87

16 22 8.1e-06 0.001 20.0 0.9 1 23 752 774 752 774 0.98

17 22 3.9e-07 4.9e-05 24.1 0.4 1 23 780 803 780 803 0.96

18 22 0.012 1.5 10.0 0.7 1 23 809 831 809 831 0.97

19 22 8.7e-06 0.0011 19.9 2.2 1 23 837 859 837 859 0.96

20 22 0.022 2.8 9.2 1.9 1 23 865 887 865 887 0.91

21 22 6.2e-06 0.00078 20.3 3.0 1 23 893 915 893 915 0.99

22 22 0.012 1.5 10.0 3.9 1 19 921 939 921 944 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	2.3e-06	0.00029	21.7	1.3	1	23	54	76	54	76	0.99
2	22	7.3e-07	9.1e-05	23.3	1.2	1	23	82	105	82	105	0.95
3	22	1.3e-05	0.0017	19.3	0.7	1	23	111	133	111	133	0.98
4	22	4.6e-06	0.00057	20.8	1.1	1	23	139	161	139	161	0.98
5	22	4.7e-05	0.0058	17.6	1.4	1	23	167	189	167	189	0.96
6	22	8.8e-06	0.0011	19.9	0.8	1	23	195	217	195	217	0.95
7	22	6.5e-06	0.00082	20.3	1.4	1	23	223	246	223	246	0.97
8	22	0.00017	0.022	15.8	6.4	1	21	345	365	345	369	0.92
9	22	0.35	44	5.4	0.7	1	23	430	453	430	453	0.93
10	22	0.00013	0.016	16.2	1.7	1	23	483	505	483	505	0.98
11	22	6e-06	0.00075	20.4	1.9	1	23	511	534	511	534	0.97
12	22	7.4e-06	0.00092	20.1	0.4	2	23	541	562	540	562	0.97
13	22	1.4e-07	1.8e-05	25.5	1.1	1	23	568	590	568	590	0.99
14	22	3.9e-05	0.0049	17.8	2.2	1	23	596	618	596	618	0.98
15	22	0.37	46	5.3	0.1	1	11	624	634	624	638	0.87
16	22	8.1e-06	0.001	20.0	0.9	1	23	752	774	752	774	0.98
17	22	3.9e-07	4.9e-05	24.1	0.4	1	23	780	803	780	803	0.96
18	22	0.012	1.5	10.0	0.7	1	23	809	831	809	831	0.97
19	22	8.7e-06	0.0011	19.9	2.2	1	23	837	859	837	859	0.96
20	22	0.022	2.8	9.2	1.9	1	23	865	887	865	887	0.91
21	22	6.2e-06	0.00078	20.3	3.0	1	23	893	915	893	915	0.99
22	22	0.012	1.5	10.0	3.9	1	19	921	939	921	944	0.92

Sequence Information

Coding Sequence: GGCGACGAGCTTCAAACGATCGCACGCGAGGTGAAGAAAAGCGAGAGAGACGAGATCTCGAACAACGATGACGAGCCGACGCATTTGGTATTCGACGACGAAAAGAACGACAAGGATCTGTGCGAGATTCTTGGAGGCGCGTCGCACACGGAGGAGACGTTCCAGTGCGCCGAGTGCGGCAGATTTTTCAAGCTGAAGGACTCATATCTGCGCCACATGAGGATTCACAAGGACGAGCGACCGTTCACCTGTCACGTGTGCGGCAAACAGTTCCGCGACTCCGGCGGATTGACGAGGCATCTCAAGGACGTACATGCGAAGCTGAAGAACTTCATGTGCGACCTGTGCGGCAAGTCGTTCGCGTCCAAAGCGACCCGGGAGGATCACCGGCGTACCCACACCGGCGAACGGCCGTACGTGTGCGATTCGTGCGGCAAGACGTTCAAGTCGAAGGCGTCCCTATACATCCACAGAAAGTTGCATACCGACGTGTTCCCGCACGCGTGCTCGTACTGCGGCAAGCGATTCCGCCGGCGGCAGGAGGTGGTAGCCCACGTGACCACGCACACCGGCGAGAAAAATCACGCGTGCGACATATGCCCGAAGAAGTTCCGGGTCAAGTCCGAGCTCGCGCGGCACAAGCTCATCCACTCTGAGAGCAAGCCGTTTGTCTGCAGCGAGTGCAATCTCGCCTTCCGGCAGAAGCGCTACTTGAACAATCATATTAAGAGCAGGCACAAGGAATCTCTGCGAGTATGCGAGCTGGCGCAGGAGAGATCTTTCGCGGCATACCGTTCCTCATGTAACGCTGCACCGAATAATGCCACGATAAAATACGAAAGCAATCCGACGAGAAACTTGAAGCTGATTGTAAAGATCACTAAAGCAAGTTCAGAAAGAGAGACATGCGATTCATCGGATAACTGCAACGCAGTAAAATACGACGAGAAAGTAAACTCGACCGCCTCAagatatcaagaaaaaaatgaatcgaCAATTCTACAATCAACGAGTAACTCTGTACAGAAGAACTACACTTGCGACAACTGCCGACGCGTTTTCAAAAGGAAGCATTATCTAATACGCCATATGACAAACTGCACACATCACGATTCAGCCAACGAAGAAGATTTGTCAAGAATGCGCGCTAAAATggcagaaaagaaaaagaagactgATAACAAAcaactgaaagaaaaagagcaaCCGATAGAAAACATTAAGACCACAAGCGACGACGAAGAACCTTATCGTTCATCGTTGATGGACCGAAAACGATCCAGAATTTATTCATGTGGCTATTGCATGCACACTGCGAAGAAGAGTAAACTGTTGAAAGCCCATCTGGCAGAGGCGCACCCCGAAGTCGCAAAGAGGAGCCGGAAGTCCTTCGTAGCTTCGGAGACAGTACTGCGCGCCCGAATGGAACACGACGGTAAAGTGTACTATCATTGCAACGAGTGCGGGAAGAACTTGAATTCGCCGTACACCTTCTACTGGCATCTGCGCATCCACACGGGCGAGCGGCTGTTCACCTGCCACTTGTGCGGCAAGCGATTCCGCGTGAACCAGGGTCTGGCGCGACATCTGAGGGAGACTCACGCCGGCATCAAGAATATACCGTGCGACTTGTGCGGCCGCATGTTCTCGACGCGGCGCAATGTCGAGGACCACCGGCGCACCCACACGGGCGAGCGGCCTTACGTCTGCAACGTCTGCGGCAAAACGTTCAAGCAGAAGGCCTCCCTGTTCGTGCACAATCGTACGCACACGGACGTGTTCCCGTTCAAGTGCAGCCACTGCGACCAGACTTTCCGCACGCGGCCGCCGCTGATGGTGCACATCACCAAGCACACCGGCGAGAAACCGCACGCGTGCGACGTGTGCGGCCGCCGCTTCCGCATTAAATGGACGCGTCGAGTGTCGAAAGACGAGTCGGAGCGACACGCACGAGTCAGCTCGCCAAGGAGTAAGCAGTCCGATACAGAAGAATTATTGGACATTAATGTCGAAAAAGCTCAATCGACGGTATCCAATGAGAAATATCTTTCATCGACGCATCTTGGTGTTTTTGATGAAAAACTGGAGAGAGACCATTCCGCAGATTCTCATGCGAACTACTCTGGACAAACGCAAAAGGCTCAAGAGAAACAGATGATGAACTCTCGAGAATGTACAGAAGGATCGAAACAATTATCGGAGCAACAACCCGAATTAACTCGCTCGACAACGGAGCGCAACGGATGTGCTTCTCACAAATGCGAAGAGTGCGGGAAAATACTTTCTACGTCATATAATCTGCTAATTCATCGCAATATTCATACTGGCGTGCGACCCTACGCCTGTTCCAATTGCGACAAGAGCTTCCGATCGGCATCCGGTCTGAACAGGCATGTGCGGTATGTCCACGACGGCGTTAAAAGTTTCGCCTGCGACATTTGCGGCCGTCACCTCGCCTCGAGGGCATCAAGGGACGAGCACAGGCGCACTCATTCCGGCGAGAGACCCCACGTGTGCGAGACCTGCGGTAAATCCTTCAAGCAGAAGGCGTCCCTGTACGTGCATCGGCTCTACCATTCCCAGGTCCTGCCGCATCGTTGCATTCTGTGCAACCGCGGTTTCAGGAGGAAGCAGGAATTAGATAAGCACGTGTCCTGGCACTCCGATAGAAAGCCGTACGTTTGCGATATTTGCAATGAGCGTTTCCGTAACAAAAGCTGTGTCGCTCGTCATCGGCGCACTCATACTAGTCAGCGCTCGCATATTTGCACGATTTGTGGCTCCAGATTCACTCAGGAGCGATATCTGAAGAGACACTGTAGCAATTTACACACGGCTGTAAGCACGTAA
Protein Sequence: GDELQTIAREVKKSERDEISNNDDEPTHLVFDDEKNDKDLCEILGGASHTEETFQCAECGRFFKLKDSYLRHMRIHKDERPFTCHVCGKQFRDSGGLTRHLKDVHAKLKNFMCDLCGKSFASKATREDHRRTHTGERPYVCDSCGKTFKSKASLYIHRKLHTDVFPHACSYCGKRFRRRQEVVAHVTTHTGEKNHACDICPKKFRVKSELARHKLIHSESKPFVCSECNLAFRQKRYLNNHIKSRHKESLRVCELAQERSFAAYRSSCNAAPNNATIKYESNPTRNLKLIVKITKASSERETCDSSDNCNAVKYDEKVNSTASRYQEKNESTILQSTSNSVQKNYTCDNCRRVFKRKHYLIRHMTNCTHHDSANEEDLSRMRAKMAEKKKKTDNKQLKEKEQPIENIKTTSDDEEPYRSSLMDRKRSRIYSCGYCMHTAKKSKLLKAHLAEAHPEVAKRSRKSFVASETVLRARMEHDGKVYYHCNECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLARHLRETHAGIKNIPCDLCGRMFSTRRNVEDHRRTHTGERPYVCNVCGKTFKQKASLFVHNRTHTDVFPFKCSHCDQTFRTRPPLMVHITKHTGEKPHACDVCGRRFRIKWTRRVSKDESERHARVSSPRSKQSDTEELLDINVEKAQSTVSNEKYLSSTHLGVFDEKLERDHSADSHANYSGQTQKAQEKQMMNSRECTEGSKQLSEQQPELTRSTTERNGCASHKCEECGKILSTSYNLLIHRNIHTGVRPYACSNCDKSFRSASGLNRHVRYVHDGVKSFACDICGRHLASRASRDEHRRTHSGERPHVCETCGKSFKQKASLYVHRLYHSQVLPHRCILCNRGFRRKQELDKHVSWHSDRKPYVCDICNERFRNKSCVARHRRTHTSQRSHICTICGSRFTQERYLKRHCSNLHTAVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -