Tbic018170.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium bicarinatum
Gene Symbol
-
Assembly
GCA_011636605.1
Location
VBVP01006252.1:62-8657[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.022 3 9.0 1.6 2 19 451 468 451 471 0.90
2 6 7.6e-06 0.001 19.9 4.2 1 23 496 518 496 518 0.97
3 6 1.2e-05 0.0017 19.2 2.2 1 23 524 546 524 546 0.94
4 6 2.1e-07 2.8e-05 24.8 6.0 1 23 552 574 552 574 0.98
5 6 8.5e-05 0.012 16.6 1.7 1 23 580 602 580 602 0.98
6 6 9.3e-06 0.0013 19.6 3.6 1 23 618 640 618 640 0.98

Sequence Information

Coding Sequence
ATGTCGGGATACCGCAAGGTAAACTACTACGAATTGTGCCGACTGTGTACAAGCAGTGAGGGTAGCAAGATGAATATCTTCCGTGACGAGGGACGCAGGCGGCAATTGCAAACGAAAATACAGACGTACCTGCCGATACAGgtATTGGAAGAGGATTCATTACCAAAAATTGTATGCCACGAATGTGTCAAGAAACTAGAGAGTTTCATAGAATTCCGAGAGACTGTGGTCAACGCTGAGGGTATGTTGGAGTCTTATTTCACCTCGCTTCGGTTTTCCGAGGAATTTCTGAAAGAGGGAAAAGTTTATGTAAAGAACACCGAAAAGGAAAGACCGTCCACACCAGAGGATGAAGTTCTCAAGTCAATGGATAAAGTGCCAACACCAGTGGGAGGccaaataatgaataatcaaCAGTCGGCAACAGATCAAATACATCAGCAGCCTGTCGTAGTTAGCAATATAAACACTTCTAATATACAAATCATCAGTGGCGTGCAAGCTAGGGTACAGCAATACAAATGTGCTATGCAGATGCAACCGGGCGGTATGGCGGCGGCAGTCGTCGAAGCTACAGCAGAGACCCACTACAGTTACCAGCAACAGACTTCCCAAGTGTCGTCGCAACAATCAAACGAAGCGCAAAATCAAATCAGCGATCAACAGAATCAATCCCCCGCGATTCAGCAGCCGACGCAGAACCAAATACAGAACCATAGTCAAATGAATCAGCAGGTACAATCCCAAAGAGCAATTTCTCAGCAGCTAAGCCAAACGGCGCAACTGTCCcaacagcagcaacaaaaTCAGAATCAAGTCAGTCAGCAGCAACAGGTGCAAGGACAATCACAGATATCGCAGCAGCTGCAACAGTTGCAGAGGCAGCAGCGCGAATTCGAGAAGCAGCACAGGCAGCTGCAACTCGAGAAACAGCAGGTGCAGATTATAACGCAGCAGGAGTTCTCGGTGAAGCAGGAGTCGCCGGTGGTGCATCAAAACAACAACATAGTTCTTAAAACTGAGGCGGACATGGAGCCGAATCAacaaattatgcaaaagaTACAGTCCGAGGCGCAGAAAGACGAATCTTCCAACCCGAACGTACAAACTTATACTACGGTGCAGGCCACGCCAGAGGTGTTTCTGAACCTGGGTTTCAAGGAGAGTCCGCTCATGACAGTCCGGGACGACAAGGAATTTAAGGAGTTTGCGAAAACGTCGTCTGACGACGGAATGTCGCGCAACTCGATCGAGCAGATCCGAGAATTCCTTAGACTCAGGTCGGGATCGGAGCCGGGTTCTCTCATCACCGTAAATCCCCAGGGACTCTCGCAGACCGCGAGGAACGCCGTGTGCCGCGACTGCGGCAAGAGCTTTCCCTCTTTCAACCAGATGAGCAGTCACAATTGCAACGTGGAGACTCTCATGAGCGAACCGTCGGACGGCGGCACCAAGGACGATCCTCTGCAGAGCAGCGTAAACTCCTTCAGCTGCGACATCTGCAGCAAGCCGTTTAAGCGAAAAGAGCATCTCTTTCAGCATCGAAAGTTGCACACGGGGGAGCGGCCGTACGTATGTACGACTTGTAGCAAAGCGTTCAGCCGCAAGGAGCACCTCGTCAGGCACTCGGTGTCCCACACCGGGCAGAAGATGCACGAGTGTGAATTGTGTGGTAAAAGTTTCTCGCGCAAGGACAATCTGCACAAGCATCGAAAGACGCACGGCGTGTCCGGTCCCTACATCTGCGAGACCTGCGGCAAGTCGTTTGTCGTCAAGCATTACTACGTGATGCATCTGACGACTCACGCGGTCGCCGTCATGGATGGCATAAATTGCCCGGATCCGTTGCCATACAAATGTGACATATGCCATAAAGCGTTCTCGGTGAAACAATACCTCACAACGCACAGGCTCAGACACAGAtccaaaaataacaataactcGGCGCAAAATAGCTTAAACGGCCAACAGTCCAACGCCACAACGAATGTCAACGTGGTGACGAATAGCGTTAGTAATACGGGAAATTTAAACAACAATGGGCAATCTAGCAACGAGTCGACCGTCGAGATGCAGAGTGTGATCGAACGGAACGAACAGGCAAACGGGTCCTTCGCCAACACACCTCAGTATCACACCAATATGCAGGAGTTTCAATGA
Protein Sequence
MSGYRKVNYYELCRLCTSSEGSKMNIFRDEGRRRQLQTKIQTYLPIQVLEEDSLPKIVCHECVKKLESFIEFRETVVNAEGMLESYFTSLRFSEEFLKEGKVYVKNTEKERPSTPEDEVLKSMDKVPTPVGGQIMNNQQSATDQIHQQPVVVSNINTSNIQIISGVQARVQQYKCAMQMQPGGMAAAVVEATAETHYSYQQQTSQVSSQQSNEAQNQISDQQNQSPAIQQPTQNQIQNHSQMNQQVQSQRAISQQLSQTAQLSQQQQQNQNQVSQQQQVQGQSQISQQLQQLQRQQREFEKQHRQLQLEKQQVQIITQQEFSVKQESPVVHQNNNIVLKTEADMEPNQQIMQKIQSEAQKDESSNPNVQTYTTVQATPEVFLNLGFKESPLMTVRDDKEFKEFAKTSSDDGMSRNSIEQIREFLRLRSGSEPGSLITVNPQGLSQTARNAVCRDCGKSFPSFNQMSSHNCNVETLMSEPSDGGTKDDPLQSSVNSFSCDICSKPFKRKEHLFQHRKLHTGERPYVCTTCSKAFSRKEHLVRHSVSHTGQKMHECELCGKSFSRKDNLHKHRKTHGVSGPYICETCGKSFVVKHYYVMHLTTHAVAVMDGINCPDPLPYKCDICHKAFSVKQYLTTHRLRHRSKNNNNSAQNSLNGQQSNATTNVNVVTNSVSNTGNLNNNGQSSNESTVEMQSVIERNEQANGSFANTPQYHTNMQEFQ