Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01002216.1:757-3676[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0042 0.58 11.3 2.9 2 23 212 233 211 233 0.95

2 11 0.00012 0.016 16.2 3.3 3 23 238 259 237 259 0.95

3 11 6.2e-05 0.0085 17.1 1.8 3 23 270 290 268 290 0.95

4 11 0.0083 1.1 10.4 1.7 1 23 324 346 324 346 0.98

5 11 0.051 7 7.9 2.4 1 23 349 372 349 372 0.91

6 11 0.0068 0.92 10.6 2.9 1 22 386 407 386 410 0.90

7 11 0.00054 0.074 14.1 0.3 1 23 424 447 424 447 0.97

8 11 0.35 47 5.3 2.0 1 23 453 477 453 477 0.95

9 11 0.0004 0.055 14.5 0.3 2 23 484 506 483 506 0.91

10 11 8.5e-08 1.2e-05 26.1 1.0 1 23 512 534 512 534 0.97

11 11 0.00028 0.037 15.0 7.5 1 23 540 563 540 563 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0042	0.58	11.3	2.9	2	23	212	233	211	233	0.95
2	11	0.00012	0.016	16.2	3.3	3	23	238	259	237	259	0.95
3	11	6.2e-05	0.0085	17.1	1.8	3	23	270	290	268	290	0.95
4	11	0.0083	1.1	10.4	1.7	1	23	324	346	324	346	0.98
5	11	0.051	7	7.9	2.4	1	23	349	372	349	372	0.91
6	11	0.0068	0.92	10.6	2.9	1	22	386	407	386	410	0.90
7	11	0.00054	0.074	14.1	0.3	1	23	424	447	424	447	0.97
8	11	0.35	47	5.3	2.0	1	23	453	477	453	477	0.95
9	11	0.0004	0.055	14.5	0.3	2	23	484	506	483	506	0.91
10	11	8.5e-08	1.2e-05	26.1	1.0	1	23	512	534	512	534	0.97
11	11	0.00028	0.037	15.0	7.5	1	23	540	563	540	563	0.96

Sequence Information

Coding Sequence: ATGATGACACTACGTTTGTTTGACAACCAGGATTACTCGACCCTGGATGCCATGCAAAACGTGTGCACGGAAAATGGCGAGATGGAGAGCTACGATTATCTGAGAGAATGCATCAGTGGTCTTGAAAGTAAAAACTCTGGAATCAGTTTGGCAGTTTCTCCTACGAGTGCCACAGACATTGGTTTACAGGAAACTGGCTTGGACGATGTTAATTTGAACAGCattgattttatgaaaatcgaaaatttgttcctGCAAACCGAGGAGTCCACAAAGAGCAAAGAGGAAAAGACAAAAGACAAGTCAAATGATATTTCACATTCGATTCGACATTTCAACACAATGAATTTAAActgttcaaatttttcaaattgttcaAGCAAAGAATCAGACAATGTAACAATAACTGTTAATAATAACGAATCGTATACATTTGACAAAGATCAGTGtttagaaattaagaaaataggaAACTACAATTGTTCTGTCAAATCTTATACAGGAAATGAAATAGATACAGATTCTAACATCGATAAAAATGACAGttgtataaatcaaaatatcacATCCAAATTgaaacgtgaaataaaaattgataatctgGAGTTGTCAGATAAAGACGAACAGATTCAGAAGTGTGAGCAGTGCCtaatgacatttaaatataaaagacacTTGGATCGTCATTTAGAAGGTCATCAAAAGAATAATTGTCCTCactgtaatgaaaaatttgccAGACGAAAGCACTTAGAGGTTCATTTGTTTCGCGCACATGGAGAAAGAGTAGTCAGGCATCCTCATTTATGCGATGTATGTCCAAAAAGTTTTCCTAAACGTACTCTTCTGAATCGTCATAGAGCCAAGCACAGCTATCAAAGTGGTAAGGTATGCTCGGAATGCGGGGATATGATAAACGCAGatacaaatgaaaaagaaCACGAGGAGAATCACTGTAAGAAGAGGCAATTCAAATGTCAGCAATGTTCGCAAACGTTCAGTATCGAGCAGACGTATCTATCCCACATTCAGAATCACGATAACTATAAGTGTTCACGCTGTGATGTTACTTTTGCATCAAAGAAGAAGGCACACGAACACTTTAAGGCAGTTCACATTCCAAAATCAAACGCGCAAGAATCGACAAATggtCCATATTTTTGTGCTGATTGTAGACATACGTTTGTAAAGAAAGATGACTATTTTCGACATTTGGAATCTACCTCACATCTTAGTAAAATCAACAGGGATGTACCTATAAGGGCTATATTTTCTTGTGCAATCTgttcgaaaaaattaatcaccCAAAGAGCCCTGGATCAACACATTAGACGCATTCACAAAGGTGCAAAGCGATTCGCTTGTAATATATACGGATGTACGTTTCAGTGTGCCAGAAGAACGGATCTAGATAGACATAAACAACTGCATGTAGAAGAACGGAATATCGTGTGTGAGCATTGCGGCAAGACATTTACCAGCGTGAGCATTCTCAAGGATCATGTACTTTACATACACAGTAGGGAGCGACAATTCATCTGTGAAGAATGTGGCAAAGCATTCAAGAGAAATAGTTTACTGAAGAGACATAAATTGTCGCACGAGCAACATCGGCCATTTGCCTGTATGCAATGTAGCACCGCATTCAAACGCTCGCATCATCTCACTCGTCACATGGAAACCTGTCACAGAATTACGttggaaaaaaggaaaaaaGTGGTAAAACTCATGAAAACAAAAGATGGTCATCTTGTGCCAGTGCCAGATAAGCCAAACAGATcggaaagtaataaaataaaaaccggAAAAGGatgcgaattaattttaaagaataaagagagagattgtTCAGtcataaatgtaaagaaacaGGCTGTAAACGTTAATTCGCAACTACAAATACAACCATTGTTAAATTCTGAGGAAAATCCTGAATGCCCTAACGTGTCGTTAGAACTTACAAATTCATCTATCGTCGATTCTATTCCACAAGTTCTTTCGTTGGTAGATGTAAATACAGGACAAGTGCTTACTGTAGAAATTACCAATAATTTGGAATTGTTACCTACTAATGAACTCATTGATCACTTTGGTACAAAttgcaatgaaatattgaatttaccGGATTATCAAGATATAGAATTTCAAAGCAATCTTATGAACACTGATCAAATGTATTATGACAATACAAGTTATTCGGAGATATCATTGGAAAATATTGAAGACTCGTTCCCGCTTGTAaacaataatagtaaaatggAAACGATAGAAAACTATTTAACTCATGAATTCTCGccatttcttaatatttga
Protein Sequence: MMTLRLFDNQDYSTLDAMQNVCTENGEMESYDYLRECISGLESKNSGISLAVSPTSATDIGLQETGLDDVNLNSIDFMKIENLFLQTEESTKSKEEKTKDKSNDISHSIRHFNTMNLNCSNFSNCSSKESDNVTITVNNNESYTFDKDQCLEIKKIGNYNCSVKSYTGNEIDTDSNIDKNDSCINQNITSKLKREIKIDNLELSDKDEQIQKCEQCLMTFKYKRHLDRHLEGHQKNNCPHCNEKFARRKHLEVHLFRAHGERVVRHPHLCDVCPKSFPKRTLLNRHRAKHSYQSGKVCSECGDMINADTNEKEHEENHCKKRQFKCQQCSQTFSIEQTYLSHIQNHDNYKCSRCDVTFASKKKAHEHFKAVHIPKSNAQESTNGPYFCADCRHTFVKKDDYFRHLESTSHLSKINRDVPIRAIFSCAICSKKLITQRALDQHIRRIHKGAKRFACNIYGCTFQCARRTDLDRHKQLHVEERNIVCEHCGKTFTSVSILKDHVLYIHSRERQFICEECGKAFKRNSLLKRHKLSHEQHRPFACMQCSTAFKRSHHLTRHMETCHRITLEKRKKVVKLMKTKDGHLVPVPDKPNRSESNKIKTGKGCELILKNKERDCSVINVKKQAVNVNSQLQIQPLLNSEENPECPNVSLELTNSSIVDSIPQVLSLVDVNTGQVLTVEITNNLELLPTNELIDHFGTNCNEILNLPDYQDIEFQSNLMNTDQMYYDNTSYSEISLENIEDSFPLVNNNSKMETIENYLTHEFSPFLNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126217;
90% Identity: iTF_01423145; iTF_01423884; iTF_01422445;
80% Identity: -