Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01001707.1:27289-34461[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.059 8.1 7.7 4.2 1 23 415 437 415 437 0.98

2 10 0.53 72 4.7 3.6 1 21 443 463 443 466 0.96

3 10 0.00017 0.024 15.7 0.6 2 19 473 490 472 494 0.89

4 10 0.00011 0.015 16.2 2.1 3 23 502 522 500 522 0.97

5 10 0.001 0.14 13.2 0.1 3 23 530 551 528 551 0.93

6 10 0.14 19 6.5 1.8 1 23 558 581 558 581 0.98

7 10 5.7e-06 0.00078 20.3 0.8 1 23 585 607 585 607 0.97

8 10 0.00079 0.11 13.6 0.5 1 23 613 635 613 635 0.98

9 10 1.3e-05 0.0018 19.2 1.3 1 23 641 663 641 663 0.96

10 10 9.1e-07 0.00012 22.8 2.8 1 23 668 690 668 690 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.059	8.1	7.7	4.2	1	23	415	437	415	437	0.98
2	10	0.53	72	4.7	3.6	1	21	443	463	443	466	0.96
3	10	0.00017	0.024	15.7	0.6	2	19	473	490	472	494	0.89
4	10	0.00011	0.015	16.2	2.1	3	23	502	522	500	522	0.97
5	10	0.001	0.14	13.2	0.1	3	23	530	551	528	551	0.93
6	10	0.14	19	6.5	1.8	1	23	558	581	558	581	0.98
7	10	5.7e-06	0.00078	20.3	0.8	1	23	585	607	585	607	0.97
8	10	0.00079	0.11	13.6	0.5	1	23	613	635	613	635	0.98
9	10	1.3e-05	0.0018	19.2	1.3	1	23	641	663	641	663	0.96
10	10	9.1e-07	0.00012	22.8	2.8	1	23	668	690	668	690	0.96

Sequence Information

Coding Sequence: ATGGAGGTGGAAGAGGGGGAGGCGAAAATGTGCAGGCTATGCGGCCAGTACGAGAGGATCTGCATCGACGTGTTCGGCGAGGAGGGCACCAAGCGCTTCCTCGGCCTCAAGATCCACACCAAAATCAACATCGTGATAGATGAGAAGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTTGAATTCGTTTGCGACTTTCAAGAGGAGTGTCGGCGCACCCAACAGGTGTTACACGATCAGTACGATGTACCATCGTTAACAGAGTCTACAGAGGTAAAGAATGAAGAATCAGCAGCATCGCCGGTGGGCACAGCGTCGGATAGTAACAACAGTATTGAAAAGAATCTTAATTCCACTAGAAGCAATCAAGCTGAGGAGAATCAGGGTGACGTAATCAAGGATTCGGAACagcagaaaaagagaaattcgaCTCCGAAGATTTTAAGAAACCTTCGCagccagcagcagcagcagcaacaagtTTCCAAAAGCAACGATAAAACCGCAGAAAAAAATGCACAGACTCAAGGTACGGAAACGTCGCTGACGCGTTGGCTTAGAAGCAGGCAAAGCGCAGATTCAAATGAGGTGGACAACGAGGAGATTCCGATCGCGAATAGATTAAGGAGTCACAATATGGAAAATAACGTCGGTGTTCGTTCTGTGAATCTTAATAATAGCAACAATGAGAATACAGACAGAAACAGCAACGAGAAACAGAGCAGTCCaaagcagcagcagcagcaacaacaacagcagcaggaCGATTCATCAGTGACGATTCAGTTACCGACCTCAGccttgaataaattattgacaatTGTTTCTAGCTCTCCCGATATCGAGGTCTCCGTAAAAGAGACGAGAAATCGGAGTAACGACGCCGAGGATATTAGCTTTACCGTGGAGTTGTGCAAGAAACAAAACGACGAAGTATCGACGGTGCGAGCACGGGTCTTTCCCGATCAGGGCTATTGTCTAGTCGATACAGCGATCGTAGATCTGCTACAGAGCGAGAACAACGCCGAGGTAAACAGCATTGTCAGCAGCATCCTTAGCAGTACGACGTCGGCGAAGAGCAGTAACGCGGCGGCAAAGTTGAAGGATTTAGCGGAGTTGGAGCAGCGGCTAGAGGCCACGCAGAACCCAGAGGACCTCTTTAAGATCGACGGCGAGGAGATTAAGGTGGACGATAACGTGCAGCACGTTGTAAACGGAGCCCAAAATGGTTACGCGTGCAAGCTCTGCCAGAAGTTCTACGAGCGCCGGGACAAGTGTACGGTCCACGTGAAGACGCACCTCGGCATCAAGCAGTACACGTGCGTCGTCTGCAATGCTAAGTTCGTTTGTAAATCAGATGTGATGAAGCACATCCGGTGCTCGCATACCAATCCTAGGCCCATACAATGTCCCAAGTGTCCTAAACGATTCAAATCCAAATTCTATCTGGCTGAACACGACAATGTTCACAAGGGCGTGCGACCGTACGGTTGTGCGGACTGCGGACAGAGTTATCACCACAAAGTCTCGCTGCAGATTCACATGAAGTCGCATCTACCGCCGCAAAATCTGGCCTGCGAGTACTGCGGCAAAGTCTTCCCGTTTCGCACGAGGCTGCTCGGCCATATCGCGAGTGTCCACATGAAGAAGCGGCGCAATTTTCGCTGTCGCTTCTGTTACAATCTTTACTCAAGTCTGTCGGTGCTGAACGAGCATATCAAAACTCGCCACGCGACCACGTACACGTGCGAAACGTGCGGCAAGACCTTCAAGGTCGCTTCCAAGTACAAGGCGCACGTGCTGCAGCACTCCAATCCAAAGCCGTTCGTCTGCAACGTCTGCAACAATCGTTACGCGTCTAAAGCGTTTCTCAACGAGCATCTGTTAAAGCACGAGGGTTTGCGCAAACACATATGCCAAGAGTGCGGCGCGAGTTTCGCACAAGCGAGTCACCTGGCCGCTCATCGTCACGTACACGGGGAAAAGACGCACGCGTGCCCGGAGTGCGGTAAAAAGTTCAATCGTCGCGACAACATGAAAGTGCATCGGAAACGGCACTTCGACGGGAAGACTAGTGGAGCTACCAAACAGAAGGTTACATCCAACAATAACAACTTGACTGCGTTAACGTCCGTTAACGAGAAGTAA
Protein Sequence: MEVEEGEAKMCRLCGQYERICIDVFGEEGTKRFLGLKIHTKINIVIDEKDPLPKAICVQCLGKLEFVCDFQEECRRTQQVLHDQYDVPSLTESTEVKNEESAASPVGTASDSNNSIEKNLNSTRSNQAEENQGDVIKDSEQQKKRNSTPKILRNLRSQQQQQQQVSKSNDKTAEKNAQTQGTETSLTRWLRSRQSADSNEVDNEEIPIANRLRSHNMENNVGVRSVNLNNSNNENTDRNSNEKQSSPKQQQQQQQQQQDDSSVTIQLPTSALNKLLTIVSSSPDIEVSVKETRNRSNDAEDISFTVELCKKQNDEVSTVRARVFPDQGYCLVDTAIVDLLQSENNAEVNSIVSSILSSTTSAKSSNAAAKLKDLAELEQRLEATQNPEDLFKIDGEEIKVDDNVQHVVNGAQNGYACKLCQKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGVRPYGCADCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCETCGKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFDGKTSGATKQKVTSNNNNLTALTSVNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_01422437;
80% Identity: -