Tbic001541.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- -
- Assembly
- GCA_011636605.1
- Location
- VBVP01001405.1:65-3222[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.6 1e+03 1.0 0.0 5 19 178 192 176 192 0.89 2 13 6.3e-05 0.0086 17.0 4.3 1 23 265 287 265 287 0.99 3 13 1.2 1.6e+02 3.6 6.3 1 23 292 314 292 314 0.97 4 13 2.8e-05 0.0038 18.2 1.7 3 23 325 345 324 345 0.99 5 13 9.4e-06 0.0013 19.6 4.6 1 23 436 458 436 458 0.98 6 13 0.00018 0.025 15.6 1.3 1 22 463 484 463 487 0.91 7 13 6e-06 0.00082 20.2 0.8 1 23 526 549 526 549 0.96 8 13 1.9e-05 0.0026 18.7 3.1 1 23 580 602 580 602 0.99 9 13 0.00014 0.02 15.9 4.0 1 23 616 638 616 638 0.96 10 13 0.00014 0.018 16.0 4.7 1 23 644 666 644 666 0.98 11 13 0.00021 0.029 15.4 1.4 1 23 672 694 672 694 0.98 12 13 4.1e-05 0.0056 17.6 6.5 1 23 700 722 700 722 0.98 13 13 0.00019 0.026 15.5 0.3 1 21 728 748 728 749 0.93
Sequence Information
- Coding Sequence
- ATGCAGATCGACAGCGGGATGTTGACGCGAATGAATCCGGACATCAGTCTCTGCCGCGTCTGCCTGACTGTGGACCACAACAGCCAGTGTATCTTCCGCAGGAACTGGGACGGTCCCGAGGACCCCTCCAGGCTGTCGGAGAAGCTGCAGCTATGCTGCGGCGTGGAGGTTCTGGAAGACGACGGCCTGCCCACTGGCATCTGCCTCGAGTGCGTGGTGAAAGTCAACGTTGCCTACGAGTTGCGGAAACAGTGTCAGAAGGCGGACGTGGAGCTCAGGAAGCTGTATGGGAAGGCCTCGAGGACGAACGTCGCCAGCAGCTGCAACGTTCCTACAAAaAATCAATGTTGTCAAACTGAGCACGCGCTTATTTTGGGTGCAATCAATTTGGAAGATAATACAGAATTAAGTGCGGATGGGGAAGTTAACATAGAAAAGAGTACCATGCAATCAAACATCATGAGACAAGAACAAATACCAGATTTCGAACAAATCAAGCAGGATATTCTAGTAGACAGCGAAGCGGATTTAGACTGCGGTAGTAGATATAAGCAACAATCAAATCAAGTAGAACATGACAAAGTAGCTAAAAAGGATCTTTATAGAACGAGAAGATTAACTATGTTTAAGAGGGTCACGTCGAtagaaaatttgaagaattataaGGAGAGACAGAGACGCTACATCAAGAAGAGCGTGAACGTCAAACGCGACAGCAGCGATGGCGAGTATCAAACGAAGGCGAGAAATGCCCACGGCAGGTCGGACAGAGCGTCCGAACTCGAGTTACAATACAAATGTCAGAAATGTGATAGATTTTATTCCAGTAAGAAGTCTTTAGATAGACACACGTCGACCCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTggataaattacataaacacGTTAATCTGCATAAAACGAAGGAGAAACCGAAGCCGGTGTTATGCAAGATCTGCAACAAGAGTTTCAGGAAGCTCGACACCATGGTCAGGCATCTGAATACTCACAAGAAGGCGTATCCCAAGGATGTCTTTTCCATCCTAAAAGAAATACGGGACAAgaggaaattagaaaataatccaGAGTCTTTTGAAACGTCACTTACGATGgacgaagacgaagaaacGCTGCACGACGGCCAGTTACACGGTGAAAGCGACGGCACGACGAGAGAGCTGAGAAAACGTAACAACGTGAAGGTGGAACAAAGGGACTCAGATTTGGTAAACAGCGACTCGAGCGACGATAAGATCGAGTCTTTCGACGACGCGTCGCTCTTCCGCTGCAAGCACTGCAGCAAGAGTTATCGCACCGAAAGGTCGCTTCAGCGTCATCTGCTGGTACACGACGAGAAGAAGTACGTCTGTAACGTTTGTAACATGAAATTCTTCCGACAGGACAGGCTCAAGAGCCACATGGACCGGTACGGTCACGACGAGACCAAGATGTGCGCGGAGCCGCAGAAACCGCCCGACGACAAATCGGCCATCAAGCTGATAAACACCTGGATAAGAGAGGAGTTGGATTCCGATAACGAGGGCAAGGGCTTCCCGTGCAGAGTCTGCGGGAAATCGTACGACACGAAGAAGTCCTTGCTGAAGCATCAGATGAACGTTCACGGCAGGCAGGACGAGTGCTGTGTGAACTGCGGCACCGAGTGTAGCTGCGCGTACAAGGATCAGGACAAGAGCAACGAGAAGTCGAAGCCGTACACCTGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATGAAGCTGCACAAGCATTTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGCTTCCTCTGCCACATATGCAGCAAGACGTTCCGGCAGAACACCGGCCTCATGTTCCACATGCGAACGCACACCGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGCTTCACGTCCAACTCGAACTGCATCAATCACGAGAGGACTCACACGGGCGACCGGCCGTTCGTCTGTCAATACTGCAGCGCCGCGTTCGCCAAGTCTTGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAATTATCACTGCAAGACCTGCGGCAAGTCGTTCCGTCGACTGAAGTACCTGAAGGAGCACAGATTTACGCACACGGGCGAGAAGCCGTACGCGTGCAAGATCTGCGGCACTGCGTACAGCCATTCCGGCAGCCTGTTCGTTCACGAGAAGAAGTGCAAGGCCCAGTACAATAATTATCAGCCGGCGGTCGCGCAAAAcgcgcagcagcagcagcaggtTTCCTATAATCAGTCCCCTCAGGTTACCGGCGGCATTTCCGTGGCGTCCACTTCTTCGATTGTCGCCCCGATCGTCACTACGCTGCCTCAGGCTCACCTAAATGTCATAAACAGCACGCTGAATGTGCAGCCGAACAAAGGCTACATGGACAATGTTCAGCGGATGAACGCGCACGTAGCGGCTAACGCGACCGCGGCCGTCTCGTCGGGTCTACACCCGAACGTCGACATCTCCGAGATGAGTTCCGCCGTCAGGAACTTCTCCATCATCGGGCAGATGTTCCACACTTAG
- Protein Sequence
- MQIDSGMLTRMNPDISLCRVCLTVDHNSQCIFRRNWDGPEDPSRLSEKLQLCCGVEVLEDDGLPTGICLECVVKVNVAYELRKQCQKADVELRKLYGKASRTNVASSCNVPTKNQCCQTEHALILGAINLEDNTELSADGEVNIEKSTMQSNIMRQEQIPDFEQIKQDILVDSEADLDCGSRYKQQSNQVEHDKVAKKDLYRTRRLTMFKRVTSIENLKNYKERQRRYIKKSVNVKRDSSDGEYQTKARNAHGRSDRASELELQYKCQKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLHKHVNLHKTKEKPKPVLCKICNKSFRKLDTMVRHLNTHKKAYPKDVFSILKEIRDKRKLENNPESFETSLTMDEDEETLHDGQLHGESDGTTRELRKRNNVKVEQRDSDLVNSDSSDDKIESFDDASLFRCKHCSKSYRTERSLQRHLLVHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKMCAEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCRVCGKSYDTKKSLLKHQMNVHGRQDECCVNCGTECSCAYKDQDKSNEKSKPYTCEECNKSFEKEMKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQPAVAQNAQQQQQVSYNQSPQVTGGISVASTSSIVAPIVTTLPQAHLNVINSTLNVQPNKGYMDNVQRMNAHVAANATAAVSSGLHPNVDISEMSSAVRNFSIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765856;
- 90% Identity
- iTF_00765856;
- 80% Identity
- -