Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01000020.1:104232-108313[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4e-05 0.0055 17.6 5.8 1 22 309 330 309 333 0.91

2 9 0.01 1.4 10.1 0.7 1 23 395 418 395 418 0.93

3 9 7.6e-05 0.01 16.8 1.7 1 23 448 470 448 470 0.98

4 9 8.1e-06 0.0011 19.8 1.9 1 23 476 499 476 499 0.96

5 9 4.3e-06 0.00059 20.7 0.4 2 23 506 527 505 527 0.97

6 9 8.4e-08 1.1e-05 26.1 1.1 1 23 533 555 533 555 0.99

7 9 4.9e-05 0.0067 17.4 2.5 1 23 561 583 561 583 0.98

8 9 1.2e-05 0.0016 19.3 1.6 1 23 589 611 589 611 0.96

9 9 0.0003 0.041 14.9 1.8 2 23 618 640 617 640 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4e-05	0.0055	17.6	5.8	1	22	309	330	309	333	0.91
2	9	0.01	1.4	10.1	0.7	1	23	395	418	395	418	0.93
3	9	7.6e-05	0.01	16.8	1.7	1	23	448	470	448	470	0.98
4	9	8.1e-06	0.0011	19.8	1.9	1	23	476	499	476	499	0.96
5	9	4.3e-06	0.00059	20.7	0.4	2	23	506	527	505	527	0.97
6	9	8.4e-08	1.1e-05	26.1	1.1	1	23	533	555	533	555	0.99
7	9	4.9e-05	0.0067	17.4	2.5	1	23	561	583	561	583	0.98
8	9	1.2e-05	0.0016	19.3	1.6	1	23	589	611	589	611	0.96
9	9	0.0003	0.041	14.9	1.8	2	23	618	640	617	640	0.94

Sequence Information

Coding Sequence: ATGGAATCTAACTCGATGCCGCCAGAAATGGAGTCACCCGGCGAGGACATTATGCTGCTCGAGACCGTGAAGAGTATAGTGACGCAAGAAGGACGCAACGAGTCGGAGGGAGCCGACGAGGATTTCTTCTTGATATCGCAGGACCAGATTGTGCAGTATCCCGAGAGGAACGTCGAGGAGACGGTGTCCCCGACGGAGGTCACGCTGGCCTGGGTACATCTCTGCAGGATATGCGCTAACGCGAGCGATCGCATGATACCCATCTTCGAGGGCGAGGGAGCGGAGCATGACTTGGCCAGCAAAATACTCAAGTACTTGCCGATACACGTATCCGAGAGCGACACTCTGCCACTGCAACTGTGCGAGAATTGCGCACACATCCTGATAGCCTGGCACGAGTTAAGCGAGGGATGCCTGAGCGCGGAGAGGAAGTTGCTGGAAATGCAGGATCCGCAACTGGGAACTAAGCAGCAGATAAAAGAATGCACGTATTACAACCCTACTTCATTGGATAATTTAGAAGTTACTACGCCAATACTTACGACAGCCAACACGACCATTGCGTCTAATATTACTAGCTCACTGTCAAATCAGCAGGACGATGACAAAAATGAAGTACGTgatacagaaaaaattaataaatctaacaGATGCGAGCTGGCGCAGGAGAGATCTTTCGCGGCATACCGCTCCTCGTGTAGCGCTGCACCGAATAATGCCATAAAGTACGAAAGCAATCCGACGAGAAGCTTGAAGCTGATTGTAGAGATCATTAAAGCAAGTTCAGAAAGAGAGACACGCGATTCATCGGATAACTGCAACGCAGTAAAATACGATGAGAAGGTAAATTCGAACGTCTCAAGAtgtcaagaaaaaaatgaatcaaCAATTCTACAATCAACGAGTAACTTTGTACAGAAGAACTACACTTGCGACAACTGTCGACGCGTTTTCAAAAGAAAGCATTATCTAATACGCCATATGATAAGCTGCACACATCGCGATTCAGCCAACGAAGATTTGTCAAGAACGCGCGCTAAAgtagcagaaaaaaaaaagaagactgATAACAAAGAGAAACagctaaaagaaaaagagcgaccggtagaaaatattaagaccACAAGCGACAACGAAGAACCTTGCCTTTCATCATTGATGGACCGAAAACGGTCGAGAATTTATTCATGCGGTTATTGCGAGCACACTGCGAAGAAGAGTAAACTGTTGAAAGTCCATCTGGCGGAGGCGCATCCCGAAGTCGCGAAGAGGAGCCGGAAATCCTTCGTAGCCTCGGAGACAGTGCTGCGCGCCCGAATGGAACATGACGGTAAAGTGTACTATCATTGTAACGAGTGCGGCAAGAACTTGAATTCGCCGTACACCTTCTATTGGCACCTGCGCATCCACACGGGCGAGCGGCTGTTCACCTGCCACCTGTGCGGCAAGCGATTCCGCGTGAACCAGGGTCTGGCGCGGCACCTGAAGGAGACCCATGCCGGCATCAAGAACATACCGTGCGACCTGTGCGGCCGCATGTTCTCGACGCGACGCAACGTCGAGGACCATCGGCGCACCCACACGGGCGAGCGGCCGTACGTCTGCAACGTCTGTGGCAAAACATTCAAGCAGAAGGCCTCCCTGTTCGTGCACAATCGCACGCACACGGACGTGTTCCCGTTCAAGTGCAGCCACTGCGACCAGACCTTCCGCACGCGGCCGCCGCTAATGTTGCACATCACCAAGCACACCGGCGAGAAACCGCACGCGTGCGACGTGTGCGGCCGCCGCTTCCGCATCAAGTATGAGCTGAAGCGGCACCGTCTGATCCATTCAGACGAGAAGCCTTGGCGCTGCACCGAATGCAGCCTCTCATTCCGCCAGAAACGCTATTTAGTTAATCATAAGAAGCTCAATCACGAGCCACGTAGCGCGGCCGTCTCCCAAGTAACGGCCTGA
Protein Sequence: MESNSMPPEMESPGEDIMLLETVKSIVTQEGRNESEGADEDFFLISQDQIVQYPERNVEETVSPTEVTLAWVHLCRICANASDRMIPIFEGEGAEHDLASKILKYLPIHVSESDTLPLQLCENCAHILIAWHELSEGCLSAERKLLEMQDPQLGTKQQIKECTYYNPTSLDNLEVTTPILTTANTTIASNITSSLSNQQDDDKNEVRDTEKINKSNRCELAQERSFAAYRSSCSAAPNNAIKYESNPTRSLKLIVEIIKASSERETRDSSDNCNAVKYDEKVNSNVSRCQEKNESTILQSTSNFVQKNYTCDNCRRVFKRKHYLIRHMISCTHRDSANEDLSRTRAKVAEKKKKTDNKEKQLKEKERPVENIKTTSDNEEPCLSSLMDRKRSRIYSCGYCEHTAKKSKLLKVHLAEAHPEVAKRSRKSFVASETVLRARMEHDGKVYYHCNECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLARHLKETHAGIKNIPCDLCGRMFSTRRNVEDHRRTHTGERPYVCNVCGKTFKQKASLFVHNRTHTDVFPFKCSHCDQTFRTRPPLMLHITKHTGEKPHACDVCGRRFRIKYELKRHRLIHSDEKPWRCTECSLSFRQKRYLVNHKKLNHEPRSAAVSQVTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126931;
90% Identity: iTF_01423852;
80% Identity: -