Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: SCRT1
Assembly: GCA_011636605.1
Location: VBVP01000018.1:5549-10420[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.9 8e+02 1.4 0.1 3 11 64 72 62 79 0.65

2 13 0.0003 0.041 14.9 0.1 1 23 232 254 232 254 0.95

3 13 1.2e-05 0.0016 19.3 1.2 1 23 262 284 262 284 0.98

4 13 1.6e-05 0.0022 18.9 0.3 2 23 292 313 291 313 0.97

5 13 1.5e-05 0.002 19.0 1.7 1 23 319 341 319 341 0.99

6 13 6.3e-05 0.0086 17.0 2.7 1 23 348 370 348 370 0.98

7 13 1.8e-06 0.00025 21.9 1.1 1 23 376 398 376 398 0.93

8 13 4.9e-06 0.00067 20.5 0.1 1 23 404 426 404 426 0.98

9 13 5e-07 6.7e-05 23.7 1.2 1 23 432 455 432 455 0.96

10 13 4.8e-06 0.00066 20.5 0.4 1 23 461 484 461 484 0.96

11 13 6.7e-06 0.00092 20.1 3.2 1 23 490 512 490 512 0.98

12 13 6.4e-05 0.0087 17.0 0.4 1 23 518 540 518 540 0.94

13 13 0.00043 0.058 14.4 0.0 1 23 546 570 546 570 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.9	8e+02	1.4	0.1	3	11	64	72	62	79	0.65
2	13	0.0003	0.041	14.9	0.1	1	23	232	254	232	254	0.95
3	13	1.2e-05	0.0016	19.3	1.2	1	23	262	284	262	284	0.98
4	13	1.6e-05	0.0022	18.9	0.3	2	23	292	313	291	313	0.97
5	13	1.5e-05	0.002	19.0	1.7	1	23	319	341	319	341	0.99
6	13	6.3e-05	0.0086	17.0	2.7	1	23	348	370	348	370	0.98
7	13	1.8e-06	0.00025	21.9	1.1	1	23	376	398	376	398	0.93
8	13	4.9e-06	0.00067	20.5	0.1	1	23	404	426	404	426	0.98
9	13	5e-07	6.7e-05	23.7	1.2	1	23	432	455	432	455	0.96
10	13	4.8e-06	0.00066	20.5	0.4	1	23	461	484	461	484	0.96
11	13	6.7e-06	0.00092	20.1	3.2	1	23	490	512	490	512	0.98
12	13	6.4e-05	0.0087	17.0	0.4	1	23	518	540	518	540	0.94
13	13	0.00043	0.058	14.4	0.0	1	23	546	570	546	570	0.92

Sequence Information

Coding Sequence: ATGGCTGACCCTGATAAAAATTCCATACAATGCTTAGTGTGCGACAGTAAAATTGGAGTGTCCACTAGAAACAGTATACGCATCTTTGATGATTCTAGTTATACTGTAACTGAAAAGTCGCTGGTGGATGTTATATCAGCTGTTTTAGAAATTGATATCAATGAGGAGTCTGCGCATTCTCTTgtcatatgtaaaaaatgtttcaagctGTTCAATGAGGTGGATGAACTTGAAAGTAAATTAACTGAAATCAAAATGGAGttatgtaacaattataaGAAGACAGTtgaagttaaaaaattgtgcGACATACTTCAAAATGAGGAAGACTATAATGATCATGATTATACAGATAATACAGAAAGTCAAAGCACTTTAATAGagGTGCACGAAGAGAAATATTATCCAGAAGATATTGATAAAGACGAAAAAGAGATACAAGATGAGGAAGAACAAGAATTTCTTGTAGAGTCAGACAACCCTTTATTCACAGTTGAAGAAGCAGACGATACAAATAGTTCtgatgataaaaagaaaacgaagaagaacaaaattaaaataagtccGGAAAATATTGTAATTAGAGATGAATCTTCGTATACTTGTTTCTTATGTCTAAACGAGGAGGAAAGATTCACGGGAGATGCTAAAGTTATTATAGCGCACATGAAAGATGTGCACGAAACGCGTTTGTACATATGTGATGTGTGTGGACAGGATTTCAGAAAGAGGAACGAACTTTCCGTGCATCTCGACGATCACGTCGCGAAGGAGGAAGGGGACTTTCAATGCGAGATatgtaatagaatatttagtaatttgcGGTTATTCCGAATTCATAAAAGGATACATTATCCCCAAGTGAAATCATGGCCCTGCGACACATGTGGAAAGAGATACAATTCCAAAAATTTGTTAGACGAACATATGAACACACACACGGGTGTTCGTCCGTATGTATGCAACACTTGTAGTAAAGACTTTGCTTccaaatatacgtataaagcTCATGTAAAAACGCATGAAGCACGACCTCGTCCATTTGAGTGCACTAGATGTAACAAAACGTTTTTGAGCCAACAAAATTTGACTCAACATGAACGAACACATAGTGGCATAAAGGAATATGTATGCCATCAATGCggaAAGGCATTTACCTCAGCTCACAATTTAGAGGTACATAATGTAGTACATACTGGATATAAGCCTTATATATGCAGAATATGTGGTAAAGCGTTTGCACGTAAAGCGGAAATTCGTGACCATGAGAGAACTCATACAGGTGAGAAACCTTATCAATGCGAGTTTTGCGGAGCAACCTTTAGTCAGAGATCGAATCTACAATCCCATAAGCGGGCGACGCATTATAACGATAAACGTTACAAGTGTGGTGATTGTGGAAAAGgttttaaaagaagaaggtTATTGGATTATCACATAAAAGCAGCACATACTGGCGAAAGACCGCACAAATGTGACGTTTGTGGCGCTACGTTTGTTTATCCAGAGCACTTCAAAAAGCACAGACGTATACATACTGGTGAAAAACCGTATCTTTGTGAGGTTTGTGGCAAAGCATTTAATAGCAGAGATAACAGAAACGCTCATAGATTCATACATAGCGATAAAAAGCCATATGAATGCTTAGTATGTGGCATGGGTTTTATGAGAAAACCATTACTTTATGCACATATGCAAGTTCAGggTCACTTAAATGATACCATAGTAGTGAATCAACCACGATTGACAACGGAAGACGATCAAGTAATAACTATTCCCAATAACTCTGGTGAACTATTGATAGAAGAAGTCGAAAACGAACagctGGATGAAACTGGATTATATGTGACTGAATTAAAAGATCATGTGATTATACAACAAGAAGGAGaagatcaaatatataatgaagaggatgttgtattaaatataccaGCAGAAGAAACCGTAACCGGCGATGTAGATTCTCTTGTCGAAGATcagATAAATTTTGTGGAGAGTGAAACTCCAGAAAATAAAGTTGATACTAATCAAGTAGAAGCGGTATACACTTATAATGAGAATGAGGAAGGTGAGACAATAGTTGTACCATCACAAGGAGATGATAAGAACGTGCGATTAGTACAGATCACGTTTCCGACTTCTGTAGATGGAGAAGGCAGAAGTTGGTTGAGCTTAGTACAAAATACTTAA
Protein Sequence: MADPDKNSIQCLVCDSKIGVSTRNSIRIFDDSSYTVTEKSLVDVISAVLEIDINEESAHSLVICKKCFKLFNEVDELESKLTEIKMELCNNYKKTVEVKKLCDILQNEEDYNDHDYTDNTESQSTLIEVHEEKYYPEDIDKDEKEIQDEEEQEFLVESDNPLFTVEEADDTNSSDDKKKTKKNKIKISPENIVIRDESSYTCFLCLNEEERFTGDAKVIIAHMKDVHETRLYICDVCGQDFRKRNELSVHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDTCGKRYNSKNLLDEHMNTHTGVRPYVCNTCSKDFASKYTYKAHVKTHEARPRPFECTRCNKTFLSQQNLTQHERTHSGIKEYVCHQCGKAFTSAHNLEVHNVVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCGDCGKGFKRRRLLDYHIKAAHTGERPHKCDVCGATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQVQGHLNDTIVVNQPRLTTEDDQVITIPNNSGELLIEEVENEQLDETGLYVTELKDHVIIQQEGEDQIYNEEDVVLNIPAEETVTGDVDSLVEDQINFVESETPENKVDTNQVEAVYTYNENEEGETIVVPSQGDDKNVRLVQITFPTSVDGEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01408467;
90% Identity: iTF_01423085; iTF_01423826; iTF_01422384;
80% Identity: -