Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01001516.1:10335-15033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0001 0.014 16.4 0.5 1 20 69 88 69 90 0.95

2 13 8.1e-06 0.0011 19.8 3.5 1 23 160 183 160 183 0.96

3 13 5.5e-05 0.0076 17.2 3.9 2 23 190 212 189 212 0.95

4 13 0.00045 0.061 14.4 2.2 1 21 218 238 218 239 0.95

5 13 3.8e-08 5.1e-06 27.2 2.9 1 23 250 272 250 272 0.98

6 13 3e-05 0.0041 18.1 1.5 2 23 282 303 281 303 0.98

7 13 0.00027 0.037 15.0 0.2 2 23 310 331 309 331 0.97

8 13 2.7e-06 0.00037 21.3 2.7 1 23 337 359 337 359 0.99

9 13 4.8e-06 0.00065 20.6 1.8 1 23 365 387 365 387 0.94

10 13 4.5e-05 0.0061 17.5 1.1 1 23 393 416 393 416 0.94

11 13 1.2e-06 0.00017 22.4 0.5 1 23 422 444 422 444 0.97

12 13 1.4e-07 1.9e-05 25.4 0.5 1 23 450 472 450 472 0.99

13 13 1.8e-05 0.0024 18.8 1.5 2 23 479 501 478 501 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0001	0.014	16.4	0.5	1	20	69	88	69	90	0.95
2	13	8.1e-06	0.0011	19.8	3.5	1	23	160	183	160	183	0.96
3	13	5.5e-05	0.0076	17.2	3.9	2	23	190	212	189	212	0.95
4	13	0.00045	0.061	14.4	2.2	1	21	218	238	218	239	0.95
5	13	3.8e-08	5.1e-06	27.2	2.9	1	23	250	272	250	272	0.98
6	13	3e-05	0.0041	18.1	1.5	2	23	282	303	281	303	0.98
7	13	0.00027	0.037	15.0	0.2	2	23	310	331	309	331	0.97
8	13	2.7e-06	0.00037	21.3	2.7	1	23	337	359	337	359	0.99
9	13	4.8e-06	0.00065	20.6	1.8	1	23	365	387	365	387	0.94
10	13	4.5e-05	0.0061	17.5	1.1	1	23	393	416	393	416	0.94
11	13	1.2e-06	0.00017	22.4	0.5	1	23	422	444	422	444	0.97
12	13	1.4e-07	1.9e-05	25.4	0.5	1	23	450	472	450	472	0.99
13	13	1.8e-05	0.0024	18.8	1.5	2	23	479	501	478	501	0.95

Sequence Information

Coding Sequence: ATGGCAAAACTGACAAAGAAGATAGAGATTCTGAAGATTGAGACATGCCATGACAATTTACTAATTCAGGATGAAGACACAGAAATCTTATTTGatgGAAACATCTCACAAGATGAACCTATAGTAGTGGACACTGCCATGACCAATAGACTGGACACTAATAATGAGAaagCAGATGATTtagttatttcaattataactgATTATCAATGTGTGACATGTCATCGTGTCTTCCAATCAAAGGATATGTTACAGAAACATGTAGATGTGTGTCGAGAAGAAGATGACTCGACTAATATGCTTGATATGGCTAATTACGATTCAGAAGATGATGATGAGGATgatttaagtttaaatattgaagaTTCGGACGAAGGCCAAAAGAATAACAACGAAAAACCTGTCATCAAGCCCGTGCCCGAAACGCAATGTCATTGTTGTGCGGAAGATTTAAAGACAGCGCACAGCGGCGGAAAGTACAAGTGTTCACATTGCCACCTCAGTTTTAAGAAAAAGGGATCCCTGGAAAGACATGTTATAGTCATACATTGGAAATGTGATTCATGCACGTGCAATGAGTGTGGTTCTTCTTTTCGCGACAAGAAGGCTTTAAACAAACATCGTTATACGACTCATGAAGatcgcaaaatttttaaatgtgAACCTTGCGACACTTATTTCTCTCGAAGCTACCACCTAAATCGGCACAGAATGCAATCTGGCTGTCACGGCCAGATACTCAGTACGTTCAATTGTCAAgtttgtaaaaaaagttttacgcGTAAGGATAATCTACGAGAACATTTGCGTACTCACGCGGGAATGCCTCAAAgacaaaagaagaaatgtaaatattgcCCGAAGGAATTCTTTACGAACCAACAGTTGTTGGTACATGAACGCATGCATACGGGAGAGCGACCAGTCCAATGCGATTTGTGCCCGAAGACATTCCTGTCGCCACTTGCGCTGAAAAAGCATCGCCGTGTACACACCGGAGAGAAGCCTTTtgaatgtaaatatTGTAAAAGGAAATTTGCCGCTCGTGAAACGCTGAATCGTCATCAACGAACGCACACCGGCGAAAAACCACACGTGTGTCAGTATTGTGGCAAATCATTCATCCAAGCAGCGCAATTAAGGGCACATGTGTTCCATCACACCGGAGAGAATGGTTTTTATTGCGATGTATGCGACAAGGCGTTTAATCGGAAGGCGCGTTTGAATATTCACAAGAAATTTGTACACGAGGGAGCGATCCCATTCACGTGTGACGTCTGCGATAAGGGTTTCACGCGAAGAGAGGACTTGGTGAAACACAGGCTGTTACACACGGGCATCAAACCATTCAAATGTGATAAGTGCCCAAAAGCCTTCTCGGCGAAATCGTCGTTGCAAGCTCATCTCAATACCCACAGACGCGAACCACCTCAATCGTGCGTCGAATGCAACCGAGTGTTTATCCGACAAGATTGCCTAATGCGGCACATTCGCGCGAAGCATCGGGAACTATTGGAGGACGTAATGAACGAGGTCGAAAAGAGGCATTTGCAAACGCAGCTATATAACATCACGTCGGCCGCTGCTGCCAAAACGAAAACTGGCGAATCTAGAAAACTCTCCATTGACGAGTTGTTGAAGGCCATCATAGATCTCTTGAGGATACTTATCGATGAGGAAACGTTACAGTTGTTTGGCTGGCCGGAGGCTCCGACACAAGACATCCTCGAAGCCGTGATCAGAAGATGCGGACACGAGCCGATAACATCGGAGACGAATGTAATATTGACCGAGAGGCTACGACAAAATGTCAAGCTTCTGTTCACCGTTGTCATCGACACAGTGAACGATGAAACAGTAAAGTCTCTTTTGACAACGAAAACGGTGGACGATGTCATTCTCCACGTTTTGGAAATATCCAATCGAGATTAG
Protein Sequence: MAKLTKKIEILKIETCHDNLLIQDEDTEILFDGNISQDEPIVVDTAMTNRLDTNNEKADDLVISIITDYQCVTCHRVFQSKDMLQKHVDVCREEDDSTNMLDMANYDSEDDDEDDLSLNIEDSDEGQKNNNEKPVIKPVPETQCHCCAEDLKTAHSGGKYKCSHCHLSFKKKGSLERHVIVIHWKCDSCTCNECGSSFRDKKALNKHRYTTHEDRKIFKCEPCDTYFSRSYHLNRHRMQSGCHGQILSTFNCQVCKKSFTRKDNLREHLRTHAGMPQRQKKKCKYCPKEFFTNQQLLVHERMHTGERPVQCDLCPKTFLSPLALKKHRRVHTGEKPFECKYCKRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCDKAFNRKARLNIHKKFVHEGAIPFTCDVCDKGFTRREDLVKHRLLHTGIKPFKCDKCPKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKRHLQTQLYNITSAAAAKTKTGESRKLSIDELLKAIIDLLRILIDEETLQLFGWPEAPTQDILEAVIRRCGHEPITSETNVILTERLRQNVKLLFTVVIDTVNDETVKSLLTTKTVDDVILHVLEISNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_01423083;
80% Identity: -