Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.2e-11 3.5e-08 33.6 0.1 3 36 40 73 38 79 0.88

2 2 7.6 1.2e+04 -3.3 0.0 22 36 105 120 105 123 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.2e-11	3.5e-08	33.6	0.1	3	36	40	73	38	79	0.88
2	2	7.6	1.2e+04	-3.3	0.0	22	36	105	120	105	123	0.77

Coding Sequence: atgaataaaaaaaataaaagtaaaggaAAATCCAACTTAAAAtccaaacaaaaaataaaaactatcaaaagaacagttaattttaaacaaagaagAATTGAACAAAAGCACTCTGCTGAAACAATTCAAGAGGCTTTGAATTATATCGGTAAAGGATATACTATAAGACAAGCAGCAGATAAATATGGCATTGCCAAGAGTACGTTGCATGCAAAATTGACAAATAGGTACTCCAtccattgtaaaaaaagtccATCCACCGTACTTACTTCAAATGAAGAGGATGACATAGTTGAATGGATAATATACAATGCTTCTCGAGGCTTTCCTATTACTAAACATACTCTTGAAGACAATgtacagaaatatttgaacagtcaaaaaagaaaaactgtaTTCAAGAATAATCGTCCTGGTCCAGGGTGGTATTCGGCATTCTTGAAGAGGCACCAACAATTATCAAGCAGAATTGCACAAAATCTTACTACAAGCAGAGCATCTGTAacggaaagaaatttaaaagaatggtTTTCTACAGTTAAGAAGCATCTAATAAACAAAAGTTTGCTAAATATAGATCCAAGTCGTGTATTTAATTTGGATGAAAGTGCTTTCATGCTTGTTCCAAAGGAGAAGGCAGTACTCGCTGAAAAAGGCAGTAGAGCAGTTTATAGAATCGTTTCGAGCAACGAAAAAGTTTGTTTAACAGTCCTTTTTAACGTATCTGCATCTAGTGTGATGGTACCACCAATGATATTATTTGATCTTAAAAATACTCCAAAAAAACttgttcttgaaaaaattccaaaagGCTGGAGTGTAGGAAACTCAGAACGAGGCTAG
Protein Sequence: MNKKNKSKGKSNLKSKQKIKTIKRTVNFKQRRIEQKHSAETIQEALNYIGKGYTIRQAADKYGIAKSTLHAKLTNRYSIHCKKSPSTVLTSNEEDDIVEWIIYNASRGFPITKHTLEDNVQKYLNSQKRKTVFKNNRPGPGWYSAFLKRHQQLSSRIAQNLTTSRASVTERNLKEWFSTVKKHLINKSLLNIDPSRVFNLDESAFMLVPKEKAVLAEKGSRAVYRIVSSNEKVCLTVLFNVSASSVMVPPMILFDLKNTPKKLVLEKIPKGWSVGNSERG

Sequence clustering based on sequence similarity using MMseqs2