Tbic023270.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- -
- Assembly
- GCA_011636605.1
- Location
- VBVP01012032.1:339-2583[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-10 1.9e-07 31.2 0.0 2 35 17 50 16 54 0.93 2 2 0.064 1e+02 3.3 0.0 8 20 165 180 164 181 0.88
Sequence Information
- Coding Sequence
- ATGCCAAgacaacatattttaaaagaaaagcaaaGGCAGGCATGGGATCCAACGCTTATGAAACAAGCAATCGACTGCgtaagaacaaaaaaattgagctACAGAAGAgctgcaaatatttttgaagttCCTATAACTACTCTTCGGAGATTGGCTGCGAAAGACTTGCCATCAGAAGCATGTACAAATATGAGGTTAGGACGAAAGCCTATAATCCCTTCAGAAATGGAAAAACAATTAGTCGATTATCTACTGGAAATGGAAAACCGATTTTTTGGTTTGACAAAAAGTGATGTGAGCGAACACGGCGAAAGCCCAGTAGAATCTGTGATAGACTCAGTGTTTACGAATAGTTGGCGGCAGTTGCCCATTACTCACGTAGCTGTGAGCGGCGGTTGCCCTTGGTTAAAAGGATATCTCGGGAACGCAGCGGCTGCCCAGTACCGAGATCGACGCTTTCGTTGCGAGCACGCATCATTACACGACCCAGGAGCGGTCTTTCATATATCCGTTACTAACGAAGGAAAGATGTCTATGGTGAAAATCACGGTCTGA
- Protein Sequence
- MPRQHILKEKQRQAWDPTLMKQAIDCVRTKKLSYRRAANIFEVPITTLRRLAAKDLPSEACTNMRLGRKPIIPSEMEKQLVDYLLEMENRFFGLTKSDVSEHGESPVESVIDSVFTNSWRQLPITHVAVSGGCPWLKGYLGNAAAAQYRDRRFRCEHASLHDPGAVFHISVTNEGKMSMVKITV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -