Tbic021556.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- ttk
- Assembly
- GCA_011636605.1
- Location
- VBVP01004655.1:4919-7076[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-14 3.1e-11 43.4 0.0 2 45 350 393 349 393 0.94
Sequence Information
- Coding Sequence
- ATGACCACCTCTCAGCGGTTTTGCCTCCGATGGAACAATCATCGCTCGAACCTGCTGACCGTGTTCGACGAGCTGCTGCAAAACCAGGCGTTTACCGATGTCTCCCTCGTCGTCGAAAACGGCGAGATGATCAAGTGCCATAAGATCGTCCTGGCTGCGTGCTCGACGTACTTTCAGGATCTGTTTCATCAGCTGTCGTCCGAGTATCGGTCGTCCGAGCATCCGATAATCATTCTCAAGGATGTCAAGCACGTAGAGATAAAGGCGATCCTGGAATACATGTACCGCGGCGAGGTGAACGTGGAGCAGAGCCAGCTCAACGATCTACTGAACCTCGCGCAGGTCTTGAAGGTGAAGGGCCTGCAGATAGACGAGCAGCCGCGCGACCTTCGCCGTGAGAACGCGACGACGGACGCGGCGGTATCGCCGCCGCCGGCTATCAGCACGAGCACCGGCGGTGGCAACTGTGGCAGCAACAATCACTCGTCACCTCTGCACACCACCGGCCACACTCCCCCGCCGCATTACTCCTCTCTTTATGGGTCGCAGGAGCGCGAGCGGAATCCTTGCCTCCTCCCGTTGCCGGTGTCGTGGAACCCTACCGCGGGTCATCAGCTCCCGACGTCGCTCTCATCCTCCGTCCTCGGCAGCGGAGGCATGTCCTACGACAACGGGACGATCGACACGTCGTTCAAGCGCCAGAAGCTGATACAGTCGTCGGGTCTGCTGATGAACAACGACACGCCGATACTGCGCACGGTGCTCGGCCAGGCTCACGTGGACAGCTCGCAGAGTACGTCCCTGCTGCAGCCGGACAGCCACGAGCCGATGCACTACCGAACCGCGAGCAGATCCGCGAGCGACGGCGACAACCGTCGCAACAATGACCTGGCCCACGGCGAAGCTGCTCATGCCAATGTCTCCTACATGGACGAGGACGAGAGACAGACGTCTCCACAATCTTACGGCGGGGACACTGTGAGGAATTCAGCCGTTGCGGATTGCGTCCAACCGAAGCCAGAATGGAAGCGCTATAAGCAATACACCCGAAACGACATAACTCAGGCGATTGATGCAGTGAGGGATGGCATGAGCGCCGTCCAGGCAGCGCGAAAATACGGCGTGCCGTCCCGCACGCTTTACGATAAAGTGAAGAAGCTCGGCATTCCGACATCGCGACCATTCAAGCGCTCGGCAAGCAACGGCGGCAGCAGGGCTTGCTTCCCGTATGGCATCGGCGCCAATGTGAACGGCACTCTCTACGATAATACCGGCAGCAGTACCAATGCCCTGTCCGAAAACGAGACCGAGAGCGGCGGTAACAATGTCAACGTCGTCGAGGGTCTGGCCGGCACTAGTACCGCAGTTTTCGAAGCTAGTACCTACGCGAAAGCGGTGAAGGATACGTCGCAAGACCGCGACTCGATGTTGGACTCGATGGCCCGTTGCAGCGCGAGTCCGGTGATATCCTGCACTAAGAGACAGCAGGATCTGGATGATCAAGTGGAAGATCTGTCGGTGAGTCGCAAATCCGACGTTTCGACGTTCCGACGTGTGATAGTACCGCCGTCCACTACATCGGCCGTAATTAAAGAGGAGGCGCAGGAAGCAGGTCTTGATAGTAACGACAGCTAA
- Protein Sequence
- MTTSQRFCLRWNNHRSNLLTVFDELLQNQAFTDVSLVVENGEMIKCHKIVLAACSTYFQDLFHQLSSEYRSSEHPIIILKDVKHVEIKAILEYMYRGEVNVEQSQLNDLLNLAQVLKVKGLQIDEQPRDLRRENATTDAAVSPPPAISTSTGGGNCGSNNHSSPLHTTGHTPPPHYSSLYGSQERERNPCLLPLPVSWNPTAGHQLPTSLSSSVLGSGGMSYDNGTIDTSFKRQKLIQSSGLLMNNDTPILRTVLGQAHVDSSQSTSLLQPDSHEPMHYRTASRSASDGDNRRNNDLAHGEAAHANVSYMDEDERQTSPQSYGGDTVRNSAVADCVQPKPEWKRYKQYTRNDITQAIDAVRDGMSAVQAARKYGVPSRTLYDKVKKLGIPTSRPFKRSASNGGSRACFPYGIGANVNGTLYDNTGSSTNALSENETESGGNNVNVVEGLAGTSTAVFEASTYAKAVKDTSQDRDSMLDSMARCSASPVISCTKRQQDLDDQVEDLSVSRKSDVSTFRRVIVPPSTTSAVIKEEAQEAGLDSNDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01421653; iTF_01423764; iTF_01423558; iTF_01422325; iTF_01422148;
- 90% Identity
- iTF_01421653; iTF_01423764; iTF_01423558; iTF_01422325; iTF_01422148;
- 80% Identity
- iTF_01421653;