Basic Information

Insect: Tetragonula mellipes
Gene Symbol: salm
Assembly: GCA_011634685.1
Location: WINE01000579.1:13253-24473[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.8e-06 0.0011 20.7 0.9 1 23 389 411 389 411 0.98

2 9 7.5e-06 0.0022 19.8 2.1 1 23 417 439 417 439 0.98

3 9 0.048 14 7.8 3.8 2 23 840 861 839 861 0.98

4 9 3.3e-08 9.6e-06 27.2 0.6 1 23 867 889 867 889 0.97

5 9 4.6e-05 0.013 17.3 2.6 1 23 899 921 899 921 0.98

6 9 0.0016 0.46 12.5 1.9 2 23 1272 1293 1271 1293 0.97

7 9 0.027 8 8.6 1.0 1 14 1299 1312 1299 1313 0.92

8 9 4.4e-07 0.00013 23.6 2.1 3 23 1501 1521 1499 1521 0.96

9 9 1.5e-07 4.4e-05 25.1 0.9 1 23 1527 1549 1527 1549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.8e-06	0.0011	20.7	0.9	1	23	389	411	389	411	0.98
2	9	7.5e-06	0.0022	19.8	2.1	1	23	417	439	417	439	0.98
3	9	0.048	14	7.8	3.8	2	23	840	861	839	861	0.98
4	9	3.3e-08	9.6e-06	27.2	0.6	1	23	867	889	867	889	0.97
5	9	4.6e-05	0.013	17.3	2.6	1	23	899	921	899	921	0.98
6	9	0.0016	0.46	12.5	1.9	2	23	1272	1293	1271	1293	0.97
7	9	0.027	8	8.6	1.0	1	14	1299	1312	1299	1313	0.92
8	9	4.4e-07	0.00013	23.6	2.1	3	23	1501	1521	1499	1521	0.96
9	9	1.5e-07	4.4e-05	25.1	0.9	1	23	1527	1549	1527	1549	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCACGCGCCGCCTCGAGTGCCGGGGGACCAGGCAGGGCACCTGCAGACCCTCCAGGCCCTCCAGGTTCTCCTACCACCGATTTTCCGGAGAGGAAAATGACTTTACGTCGGATGGCGAGGAGAGTGGCGGTGGAGGAGCTGGCGGAGACGAGGCCGTGGACCTCACGGCGTCCAGGTCGACGCATCAGGGCGACGAGGACGACAAGGATCAGGAGGACGGTCTggaggaggacgaagaggaggGCGTGGACGATCAGGACGAGCAAGAGGACGACGAGGAAGGATCGCGGAAGCAAATGCATCACAGACAGGACGCGGAGAACAATAACAATTTCGTAGAGGGTGGCACGGCCGCCGGCCTGTTCCCACCCGCTGGGACTAGCCACGTCACTCTAGAAGCCCTTCAGAACACGAAAGTGGCGGTCGCACAGTTCGCGGCGACGGCGTTGGCCGGTGGCGCCGACACCGAGGCCGCGCTCCAAGACCTGGCGCTGCTGCAGAGCACCCTGTACACGCTGCAGCATCAACAAGTGTTCCAGCTACAGCTGATCAGCCAACTGCAGCAGCAATTGTCGATCACGCACAGTCAAACGGCTATGCAACAGCCAGCGGCCGGCGGCGAGCCGTCGGACACGGTGAAGGAGATATCGCCGTCGCCGATCATCCAGCCTAAACCGCTGTCCAGTTTGACGTCGCCTCCGTCGTCGCGTCCGCCGTCGCATCAGCAAACATCGCCAGCTCCGATGACGCCGAACCTGACCGCTCAGGAACGGCCGACGCCGACCAGCAGCGCGTCACCGCTGAATATCCCGCTGGTCTCGTCGAACGCAAGCGGCGCGTCCGCCACCGGCAGCAACACCGGCAGCCAGGTGCCCATGTCGCACCAGATACCGCCCCTCTGCTCCATCAGCTCTTCCCTAGCCTCGTCGATAATAACCAACACCGATCCACCGCCGTTGCACGAGCCCAACACTCTGGAGATGTTGCAGAAGAGGGCGCAGGAGGTGCTGGACAACGCGAGCCAGGGACTGCTGGCGAATAACCTGGCGGACGAGCTGGCGTTCAGGGGTGGAAAAGGCTCCCGTCTCTCACCGTACGACTCAAAGTCCGGTGGTAGCGGTCGCGGGGAGCCGTTCTTCAAGCATCGGTGCCGCTATTGCGGCAAGGTGTTCGGCAGCGACTCGGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGAAACCTCAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCATCCACCCTTGCTACAGCAAATCGCCTCCGGTCAGAGACCGATGCCGTccccgccgccgccaccgccctCTCACCATCCCACCTTTCACCCGACCGCGGCCCACGGTTTTTTACCCCCTCAGCCGCCGTTGCCGCTCAGCCTGGCCCTTCCCGGTATACCAACCCTGTACAGATCGCCGGTTATCGCTCATCGGGATGATCAGGACGTGCCGGAGAACCTGAGCAAACCCGTTGTTACCACTGCCCCGACCACGTCGTCCCCACATTCCCCCGCGGTTGCGTCCAACTCTCGTCATTCCTTTCACGACAATCACCataaccaccaccaccaccaccaccaccatcaccaacaacaacaacaacaacaaccatcacaacaacaacaacaacaacaacaacaacaacaaaagcAGCAGCTCGAACAGAGGGACGAGATCAAGCACGAACAACGATCGCCCATTCAGGAACATCAGCAAtatcaacagcaacagcaacagcaacggCCCAGCGAGGGTCAGGAACCGAGCGAGAGGATAACGCCGAAGAAAGAGCCGGAGGAGGCCGAGGAGCCTACGGAGGAGGAGAGCGAGGACTTCGAGGAGGCGGCCAGACGGTATTTAAACTCACCCCAATCCTCCGTCAATCCATCCTCTCAACCGCAGACGTACGAAGACTGTAGTATGGACAGTAAGATGAGCGGTCGACTGGAGGGAGACGGCGACATGGAGGTCGACGAGGAGATCGAGGAGCAGCCGGAGAATTTGTCCGGTCGGGGGACCATCGGTCGTTTGCCGCAGCACATTGTCGCGTATCCCGGAGCCTCCCCTGCTAGCAGTAGCGCCAGTAGCGGAAGCCTTCAAACGTCCTTCGCGGGGATTTTGTTCCCAGGGCCGCCGGCGCATCATCAAATACCCGCACATCACGCCGCACCGCCGACCGTAAACGCGCCCGCCAACGTTCCCACCAACGAGATGATCGACCCGGCCAAGGATCCGGCTATCTACTCCAGCCTGTTGCCACGGCCGGGCAGCAACGACAACTCGTGGGAAAGTTTGATCGAGATAACCAAGACCTCGGAAACGTCCAAGTTGCAGCAGCTGGTCGACAACATCGAGCACAAACTGACCGATCCTAACCAGTGTGTCATCTGCCATCGGGTCCTCTCCTGCAAGAGCGCCCTCCAGATGCATTACAGGACCCACACTGGCGAACGGCCGTTCAAGTGCAAGATCTGCGGCCGGGCGTTCACCACCAAGGGTAACCTGAAGACTCACATGGGCGTTCACAGGGCGAAACCGCCGCTGAGGATGTTGCACCAGTGCCCGGTCTGCCACAAGAAATTCACCAACGCGCTGGTGCTGCAGCAGCACATACGGCTGCACACCGGCGAGCCGACGGAGCTCAGTCCGGAGCAGATCCAAGCGGGCGAGGTGAACGAATTCCCACCGGGTTACTCGCATCACCCGTTGGCCTCGTTCCTCCCGCAGGGCTTCCCACCGATTCATCCCGCGGCCGGTGCCGGATTCCCCTTGACTTTTCCTCCGACTCGACCGCTGGAAAGACAGGTACAAGAGAACGACATGGATTCGAAAGACGAGTctcaacagcagcaacagcaacagcaacagcaacagcaacaacaacagcaacaacaacagcaacaacaacaccagcatcagcatcatcagcatcagcatcatcatcaacaacaacagcatcatcatcatcatcatcatcatcatcatcatcagcagcaacaacagcagcagcagcagaggtACTCCGAGGAGCAGAGCGAGGAAGCGGACGACCAggacgacgaggaggacgatCGCAGAGAGGATGACGACAGATGCGTCAATGTGAATCGCGGTGGAGACGTGGACGACGAGCAGGATCGCGAGAGCGAAGAGAACGAGACGCAGAAGGACGCGGTGTCGTCTCTGCCGAGCTTCTCGACCTCGTTGGCCGCCCTGGAGAACCAGGTGCGAACGATCACGACGACCGCGACGTCGACGGTGGGGAACCTCGCGGCCAGGTCGCCGCCGTTTCACCGTTACAACGGCAGCGAGAAGAGCAACAGCCCCCCGAACCCTAGCGCCCCGTTGGACCTGACACCTCGGGCCTCGTCCACCCCGGCCTCGGTCGCGTCGGTGCCAACGCCACCGCCGCAGACGAGCACGCACCATCCGCACCCGTTCGGCATGTTTGCAGGCCTGCTGCAAGCGGTCTCCTCGTCCTCACCGTCCACCAGCGGCATCGGCTCCTCGAGCATAAACAGCGTCGTCAACTCGATGAACGCCGTGACACCGGGGAGCGTCTCCGCTGCCGGACCGTTGGCCTCCCTCACCACGTCAGCCGTGTTGGCCGCCACGTCCACCTACAATCCGCTCGGCCTAGCTGTCGGCGGGCCAGCAGTGCGTGGAAACACCACATGTAATATCTGCTACAAGACATTTGCGTGCAATTCCGCGCTGGAGATCCATTATCGGAGCCACACGAAGGAGCGGCCTTTCAAATGCAGCATATGCGACAGAGGGTTTTCCACGAagAACGATGGTTCCGGGCAGCAAGCATGCATCTGTGCGTCTCAACCGTTGCCCGCTAACAGTTCGATCGGTTCGCCCGATCCTCAATTCGGATCAGCGTGCGCCAGTAGTCGAGAAAAAGCGAAACgcaggcggcggcggcgacccGAGGATCGGAAGAGCCGGGGGCGGAAAGGAGCCGGAGGGGGGCGGGGGCTCACGCCTCTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCGCCCGCCCTCGGACTTCTACCCTCGGCGCACGGCCTCCTGGGGAACATGAAGCAGCACATGCTGACGCACAAGATCCGCGACATGCCGCCGCACTTGTTCAGCGACTCGAAGCAGCAACACTCTCAGCAACAATCGCAGGAGCACGAGACCTCGTCGAGAAGTCCGATGTGCGCGGAGGACTCGAGCTTGCCGCCGCctccgccaccgccaccgccgccgccgatGCCGCCGACCTCGATGGGGGAGCAGGGCATCGCGGTGAAACGATCCCCGCCAGAGGGGGAGCTACCAGCGCCAAAGAGACCAGCCAGCGTGCCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTGCAGATCCACATGAGAACTCACACAGGGGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTACACATGGGTACTCATATGTGGACCAACGGAGCATCTCGGCGAGGTCGTCGAATGTCCCTGGACCTTCCTCCCCTACCCATCACCCCCAAGGACTCGGAGTTCCTCCAGCGACGGCCGGATCTTTTCTACCCGTATCTACCCGCGCCGTTCCTTAACGGCGTGCAGCAGAAACTGAACGAGATCTCGGTGATACAAAGTAACAACGGCCTACCGAGCCACTCGGTAGCCGCCGGCAAGTACGCCGGACTGTTTGGCTCGGTGTACGCTGCTGGGGCCGGGTTCCCCCTGGACAAGCAACCGATGGCAGCGAGCAGCAACGGGCCGCTGCTCGACGGGAAATCCTCCATCCCGTCCGGGTCCATGCTGTTCCAAACGCCGTCGCCCTCTCACTCGCCAGGCACGCCAGGTTCCAACGGCAGCGGCAATCAGAACAGCGCGAACGTGTCCTCGTGGACGGGGGACGCTCTTCAGCATCACTTCGAGAGAGAGCCGCCGGCTGCCAGGTCGGAAAGTAACTCGACCCCACCATCGGCTCGACTTCCGCCGCCGCCGGCCGCCAGGGGTGAAGGACTGGCCACGTGA
Protein Sequence: MQLMRWSITRRLECRGTRQGTCRPSRPSRFSYHRFSGEENDFTSDGEESGGGGAGGDEAVDLTASRSTHQGDEDDKDQEDGLEEDEEEGVDDQDEQEDDEEGSRKQMHHRQDAENNNNFVEGGTAAGLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADTEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHSQTAMQQPAAGGEPSDTVKEISPSPIIQPKPLSSLTSPPSSRPPSHQQTSPAPMTPNLTAQERPTPTSSASPLNIPLVSSNASGASATGSNTGSQVPMSHQIPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPTFHPTAAHGFLPPQPPLPLSLALPGIPTLYRSPVIAHRDDQDVPENLSKPVVTTAPTTSSPHSPAVASNSRHSFHDNHHNHHHHHHHHHQQQQQQQPSQQQQQQQQQQQKQQLEQRDEIKHEQRSPIQEHQQYQQQQQQQRPSEGQEPSERITPKKEPEEAEEPTEEESEDFEEAARRYLNSPQSSVNPSSQPQTYEDCSMDSKMSGRLEGDGDMEVDEEIEEQPENLSGRGTIGRLPQHIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPAHHAAPPTVNAPANVPTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRMLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYSHHPLASFLPQGFPPIHPAAGAGFPLTFPPTRPLERQVQENDMDSKDESQQQQQQQQQQQQQQQQQQQQQQHQHQHHQHQHHHQQQQHHHHHHHHHHHQQQQQQQQQRYSEEQSEEADDQDDEEDDRREDDDRCVNVNRGGDVDDEQDRESEENETQKDAVSSLPSFSTSLAALENQVRTITTTATSTVGNLAARSPPFHRYNGSEKSNSPPNPSAPLDLTPRASSTPASVASVPTPPPQTSTHHPHPFGMFAGLLQAVSSSSPSTSGIGSSSINSVVNSMNAVTPGSVSAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNDGSGQQACICASQPLPANSSIGSPDPQFGSACASSREKAKRRRRRRPEDRKSRGRKGAGGGRGLTPLYPAIRLPPLMSPALGLLPSAHGLLGNMKQHMLTHKIRDMPPHLFSDSKQQHSQQQSQEHETSSRSPMCAEDSSLPPPPPPPPPPPMPPTSMGEQGIAVKRSPPEGELPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPSHSVAAGKYAGLFGSVYAAGAGFPLDKQPMAASSNGPLLDGKSSIPSGSMLFQTPSPSHSPGTPGSNGSGNQNSANVSSWTGDALQHHFEREPPAARSESNSTPPSARLPPPPAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00983138;
80% Identity: -