Basic Information

Insect: Tetragonula mellipes
Gene Symbol: -
Assembly: GCA_011634685.1
Location: WINE01001454.1:4478-9994[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.42 1.2e+02 4.8 1.8 1 23 533 556 533 556 0.97

2 9 3.7e-05 0.011 17.6 0.4 1 23 562 584 562 584 0.97

3 9 0.013 3.7 9.6 0.5 1 23 590 612 590 612 0.98

4 9 4e-06 0.0012 20.6 0.3 2 23 619 640 618 640 0.97

5 9 0.28 82 5.4 0.3 2 23 647 669 646 669 0.94

6 9 8.8e-06 0.0026 19.6 0.5 1 23 673 695 673 695 0.98

7 9 0.0099 2.9 9.9 0.7 1 23 700 722 700 722 0.98

8 9 1.1e-07 3.2e-05 25.6 0.5 1 23 728 750 728 750 0.98

9 9 0.00018 0.052 15.4 1.1 1 21 755 775 755 776 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.42	1.2e+02	4.8	1.8	1	23	533	556	533	556	0.97
2	9	3.7e-05	0.011	17.6	0.4	1	23	562	584	562	584	0.97
3	9	0.013	3.7	9.6	0.5	1	23	590	612	590	612	0.98
4	9	4e-06	0.0012	20.6	0.3	2	23	619	640	618	640	0.97
5	9	0.28	82	5.4	0.3	2	23	647	669	646	669	0.94
6	9	8.8e-06	0.0026	19.6	0.5	1	23	673	695	673	695	0.98
7	9	0.0099	2.9	9.9	0.7	1	23	700	722	700	722	0.98
8	9	1.1e-07	3.2e-05	25.6	0.5	1	23	728	750	728	750	0.98
9	9	0.00018	0.052	15.4	1.1	1	21	755	775	755	776	0.94

Sequence Information

Coding Sequence: ATGataaaagaaaatgatggaCTACCGCAGATTGTTTGTATGCGATGTTTTGGTACACTGGAGTTCTTATGTGATTTTTATGAGCGCTGTCATCTTGTTCAAAAAGGATTTTCGAAAGCTAGTCAAAATACAAGAGATGAAAAGTCCCAGGGAGACAGCGATGTAGAATCAGATAAGGAGAACACTGTCCCATCAAAGAATGGGAGCAAATGCAAGGTCAAGGTTTCATCGCCTGACGATCCAAAGAGTACAAAAAATTGTCTTTCAGAAAGTAATATATGTAAGActgaaaggaaagagaaaagcgTCAATCTCGTAGATAATAATTCGACTACTGATAATTACTCGGTTACACAAAGTACAGTACAATTAAGCGATGTAACTTCATATGAAAAAATGCCGGGAAATGATCAGCACGACGTTGGCAGTTTAAAACGTaggaatataaaagataatattgtaaaaaggcCTGCAATTCGTGCAAACTTAACGAATAAGTCGCTGCAAAAGAATGAGAAGAATGATATTCGTATGAAATCAGGCCAGCCAGCACGATGTAAAAGAGGGCGGAAAAGTAAATTCGAGAAGATGAGAGAGAAAATCCGAAATGATTGTTTCTTCAAGGTCTGTCGCAAAACTGATTCTTCACTGACAAAGAAGAGTGATAATTTTGACaacaatagaaaaaagaaaaatttggacGACGAACGCAAACGAAGTTGCCTGCCCGCTATTTGTGATAATGATAACTCTAACAATGTGATCAATGATGTTACGACTTTGCCATCTCAAATCGACGTGGAACAGTCGATTGATACTCCCTTAGATACTGATTTTACCAAAAGTAACGAAGCTCGTATAGTGATTAATAAACCACtagaaataaaatctaacaGTGAAAGTATGGAGAAACCTGGCAATTGTTCGAACAATACAGAAGACTGCTCTGTAAAAAGTAAAGCAATGTCGTCGGTTATTCCAAGAGAAGTAAAAGGAGAAGCAGAAGATACTTCTCCTCTTAAACAGAATTTAATGAAGAATCAAAGTTTGCTGGCAGAAGAATCTGAAGAAACTGAAGATAGTGAGATAACTAATTTAATAACAGTACCTGACAGTAATTCTGATATGGGAATTATTTCCGTTCGTAACGATCAACAATCTGAAATATTCACAGAACCAAATCGTATGGTTGTTATAaaatcctcttcttcttctaacaAAGTATCAAATCCAAAGACGATACAGGAAGATTGTACAGAAGTTTGTATCGGGGTAGATATAGATcaaagtaacaaaaatgaaGAACGCAACGTTCTCAACGAACGTTCATCGTCTCGACTCAGTCAAGATAGTTTCAATGgagctaaaaataaaaatagaccgtttggtaaaatttccaaattaataagCGATGAACAGAAACGAATCATTGAAACTTATTACGTGGTGAATATGTCAACGATAAACTCGGAGGAAGTACAAAGAAATATAACggtaattgataaaaagaatatacgCTGCAATATTTGTGGTAGCCTCTATCTTAGAATGGATAAGTGTCAAGTACATATTTGGGGACATTTACAAATGAAACCGTATCGATGCAAAGCTTGTGATTTTGCTACAGTTACTGTTAGCAATGTTCGTTGCCATATTAGAAAGAGTCACTTGAAAATTAAACCATTCGCGTGCCATCTTTGTGAAAAACGATATGTAACTGCCGTATTATTAGAAGAACATATTAATACTCATACAGGTGCGCGTCCATACAAGTGCGAACTTTGTGACTTCGCAGGTTCCAGTAGACAAACGCTAAATTACCATAGTGCTACTCATAAACCACGAaagGATGTTAGCTGTAAAATTTGTGGGAAAGAGTTTTATTCAAAAACTAGATTACGCGCGCACATGATCGTACATAACAAGGATAAAGCTGTTATGTGTAAACTATGCTCTGCTTATTTATCTAACGCAGAAGCATTAGAAATGCAccataaaaatattcacatgCAAGATTATGTATGCAATGTATGCGGGAAACGTGTCAAATCAAGAAAAGCTTTGTACAATCATCAAAATGTTCATGCTGcagcaaaatataaatgtactttgTGTCCAAATGTGTATAAGAGTAGCCAAATACTAAAGGAACATCTTTTGAAGCATGAAGGCATCAGAAAGTACAAATGTAATGTTTGTGAAAAATCGTTTGGTCAACAATCTCATTTAGCTGCTCATATGGCAGTACATAGTAAAATTAGattCCATTGCCCCGGATGCAGCAAACCTTTCAATCGTCTGGATAATATGAAAATGCATACTAAACGATGTAAACCATTCTTGACAAATCCAGATTTGAAAAGACTTTTAAATAAGAGAGAAAGGACTATATCGTTCGATAACGTAGCAGAATTAACTGCAGAACTGAAGACTGGAAATATGACAAATTCCGTGTCTTCAGTTTCTCTACAAAATCAAAATGGTGATATATCAGTAAAGACTGAGGAAGAGACTGTGTTGAATCTTTGCAAATTAGGACTGAATATTTCTCCCGTTGAATCAACAGATGAAGCATGTAATTCTgataagaaatataatgaaaaagaagtCACGAAATCTGCCGATATTAATGtagttaaaattgcaaatactaATGACAGATTAATtgcagaaaacgaaaatttgccagtttttgaaaatatcttgggaccggaaaattattaa
Protein Sequence: MIKENDGLPQIVCMRCFGTLEFLCDFYERCHLVQKGFSKASQNTRDEKSQGDSDVESDKENTVPSKNGSKCKVKVSSPDDPKSTKNCLSESNICKTERKEKSVNLVDNNSTTDNYSVTQSTVQLSDVTSYEKMPGNDQHDVGSLKRRNIKDNIVKRPAIRANLTNKSLQKNEKNDIRMKSGQPARCKRGRKSKFEKMREKIRNDCFFKVCRKTDSSLTKKSDNFDNNRKKKNLDDERKRSCLPAICDNDNSNNVINDVTTLPSQIDVEQSIDTPLDTDFTKSNEARIVINKPLEIKSNSESMEKPGNCSNNTEDCSVKSKAMSSVIPREVKGEAEDTSPLKQNLMKNQSLLAEESEETEDSEITNLITVPDSNSDMGIISVRNDQQSEIFTEPNRMVVIKSSSSSNKVSNPKTIQEDCTEVCIGVDIDQSNKNEERNVLNERSSSRLSQDSFNGAKNKNRPFGKISKLISDEQKRIIETYYVVNMSTINSEEVQRNITVIDKKNIRCNICGSLYLRMDKCQVHIWGHLQMKPYRCKACDFATVTVSNVRCHIRKSHLKIKPFACHLCEKRYVTAVLLEEHINTHTGARPYKCELCDFAGSSRQTLNYHSATHKPRKDVSCKICGKEFYSKTRLRAHMIVHNKDKAVMCKLCSAYLSNAEALEMHHKNIHMQDYVCNVCGKRVKSRKALYNHQNVHAAAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKSFGQQSHLAAHMAVHSKIRFHCPGCSKPFNRLDNMKMHTKRCKPFLTNPDLKRLLNKRERTISFDNVAELTAELKTGNMTNSVSSVSLQNQNGDISVKTEEETVLNLCKLGLNISPVESTDEACNSDKKYNEKEVTKSADINVVKIANTNDRLIAENENLPVFENILGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01420468;
90% Identity: iTF_01418541; iTF_01419824; iTF_01420468;
80% Identity: -