Tmel023678.1
Basic Information
- Insect
- Tetragonula mellipes
- Gene Symbol
- -
- Assembly
- GCA_011634685.1
- Location
- WINE01000168.1:36810-42351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 3.9e+02 3.3 0.3 1 10 303 312 303 314 0.94 2 12 7.3e-06 0.0021 19.8 0.9 1 23 318 341 318 341 0.96 3 12 1.4 4.2e+02 3.2 1.6 1 20 400 419 400 423 0.77 4 12 5e-07 0.00015 23.5 1.4 1 23 429 451 429 451 0.97 5 12 0.0023 0.67 12.0 0.1 1 23 460 483 460 483 0.89 6 12 1.8e-07 5.2e-05 24.9 3.6 1 23 489 511 489 511 0.98 7 12 3.6e-06 0.0011 20.8 1.0 1 23 517 539 517 539 0.98 8 12 2.4e-05 0.0071 18.2 2.0 1 23 545 567 545 567 0.97 9 12 1e-08 3e-06 28.8 1.8 1 23 573 595 573 595 0.99 10 12 8.4e-06 0.0025 19.6 5.7 1 23 601 623 601 623 0.98 11 12 2.8e-06 0.00082 21.1 2.3 1 23 657 679 657 679 0.98 12 12 1.1e-07 3.1e-05 25.6 1.5 1 23 685 707 685 707 0.98
Sequence Information
- Coding Sequence
- ATGGCAGAAGCACGACTTTACGACTCGACGATTTGTCGGCTGTGCGCGGAGGACAACGGCAACGGTGAATTATTGTACATGGGCGAGAGCGACGATCCAGATTTGAGTTCTATGGTCAATCGGTACTTGCCGCTCAAGATACGGGACGATGGCAAACTACCACGCACCATTTGCCCTGGTTGCAACATTCAACTGGAGGCTACGATACAGTTTTTTGAATTATTGGTGGATGGTCAGAGGAAAATTCGTGAGATGTGGAAGCATCAGATAGAACAGCAACGCAAGGTCGAACGAGAACGTCTACGTGCCGAAAAGGAAACTACAGAAGTCAGATCAGAAGCATCACAGCTGGACAATATTTCAAGATACAACGAACAGGACCAGTTTGAACAacagattataataaaaaTAATGCCAGATGGTTCTATGTACGCTGCTGAACACGAAATGAGTTTACAAATGGAGGGATTGAGCAAACCAAAACGAAAACGAGGACGTCCACCGAAGTCTCACACGGAAAATATGTCTATGGAATTAGGCAAGGGAGAAGCGGCAGAGATAGCTagtcaagaagaagaagacaaacaTGAAGAAGAAACAGACGAAGTAGATGGAGATGGAAGACGTCGTAGAAAGCGTAAAGTTCCTAAAAGATATATGGAAGCTGTTCAAGGGAAAGAACTAGAAAGAATATACAAAGAAGAGGGAGTGATCGacgaagaagatgatgatgaacctgataattttgaagattctGAAGAACAATTAAATATGTCTGTTCCTGATAGTCATGAAGAAATAATTGGTCACTTAGAATCTGAAGAAGGAAAAGACCTTGGAGAATTGGTGGTTGTAAATCGAGGTAGAGGACGAGGTCGACCAAAATTACGCcgtagaagaaataaattcacgTGTCAATTGTGCGGTCGAGGATTTCTTCAACGTATAAAGTACGAATGTTcagaatgtaaaaaattatttacaagtaaagaaaatttagaattgcATCAAAAGGCAACTCATGATGTTGGGAATGATGTTAATCAAGATTTTGAACATATTGTTCAAGATCCAAACTTTGAATCAAAACATCACTTATCCGAAGGAGATGATATTTCTAGTACACTTGATCATGCTTTAACTGAGGAACAACATTCGAATAAATTGTCAAGTAATTCTAGCGATTctcagaaaaatttttcatgcgATCAGtgtgagaaattatttgaaacaaaagaaacgcaTGACTTACATTTTAAAATGGCTCATGatcgcgataaattatttatatgcactatttgtaataaaagtttcactCAACAAGCGGCTTTGAAACATCATTTGTCAATACACGagaaaaataaattagagaaagaaTATCCATGTGATATTTGTGGAAAAGTGCTCAATCATCCTAGTTCTGTAGTGTATCACAAAGAAGCGGAACACAATAATGGACGCCGATTTGTTTGTAACAAATGTGGGAAAAGTTTTAAACATAAACAATTGTTACAACGTCATCAACTTGTTCATTCTGATGATCGGCcatatatttgtaaatcttGTAATGCCAGTTTTAAGACAaaagcaaatttaattaatcatcagTCTACGCATACCggggaaaagaaatatttttgcgaaatttgtGGACAACAATTTGCACATAAAACTAGTCTTACACTCCATTACAGGTGGCATACGGGACACAAACCTTATACGTGCGAGGTATGTCATAAAAGTTTTTCACAAAATGGAAATTTACAAGAACATATGCGAATACATACAGGAGAAAAACCTTATTGCTGCGATTATTGTGGTAGAAAGTTTACTACTTCTTCACAATTTAAACTTCATGTTAAACGACATACTGGCGAGCGTCCTTGGAAATGTGAATTTTGTGCAAAATGTTTTTTGCATAAAGATACGTGGAAATGTCACGTACGCAGACACAAGGGAGAACGTCCTTTTCAATGTGCTCATTGTAATCGAAGTTTTACCGAACAATGGGCTTTAAAAAAGCATCTTCGTTTGCACACcggtGAGAAACCTTATTCCTGTGATATCTGTGGAAAAGCATTTGCTGACTGTTCAAACTTAACAAAACATAAAAAGGTACATagagaaaataaactttctGCAATAAGTGAAATAGAAGGGTCTCCTATCGGAGAAGTTTGGCAAATTTTACCAAGTTCTCAAGAATCTGATGAGCATTCATTAACTGACCAAATAGCACAAGTTATTGCAACGGATGAGACATCTGGAGATGGTATTcaacaaataatatatgtttcatATCAAGATCCAGATGATCCTAATCAATCTCGAACTTTGCATTtcgTTGATGCTGGAATGATGAGAAATAAGGAGGAGAAACCAAATGTAAGCCAATCATTATCACATTTAAACGTTAGCAATGATGGAATGCTTTCTAATCCAGTTCATGCTAATGAAAATAATAGctcaaacgaacgaataaatgtGGAACTTTCAGAATCTGATCTTCAACTTCAGATTACAGATGAAGAAGGTAATCCAATTCCTCTTTCAATTCAAGATGCCCGACAGCTTTTATCTCAGAGTcaatttgttaatcaattaaGTGATGGTCAAGAAATCCGAGTTCACCCTGGCGTCATACCAGATGAATTAACAACACCATTAAATGTACACGTTAATCAAAATTCTGACATAAAGAATGTTGACATTTCCAATACGGTagaaacaaaagtgaaaaatatttcaactgtaCAAACAGATGCAGAAGCAATTGTGAAAGCACTAcagGATGAAGATACAGATGCAAATGCTGTTGCAACAATTAATCAAATAGAAGGATCAGAACAATCAGGAATTGCCGAAAACGAACAAGCAATAGAATTCACTACACAAGATGGTCAGAAAGTTCGTTTAGTTACTTCTTATCACGTGGATCCAATGCAACTTGCTTCTGAGTACCTGactattgtataa
- Protein Sequence
- MAEARLYDSTICRLCAEDNGNGELLYMGESDDPDLSSMVNRYLPLKIRDDGKLPRTICPGCNIQLEATIQFFELLVDGQRKIREMWKHQIEQQRKVERERLRAEKETTEVRSEASQLDNISRYNEQDQFEQQIIIKIMPDGSMYAAEHEMSLQMEGLSKPKRKRGRPPKSHTENMSMELGKGEAAEIASQEEEDKHEEETDEVDGDGRRRRKRKVPKRYMEAVQGKELERIYKEEGVIDEEDDDEPDNFEDSEEQLNMSVPDSHEEIIGHLESEEGKDLGELVVVNRGRGRGRPKLRRRRNKFTCQLCGRGFLQRIKYECSECKKLFTSKENLELHQKATHDVGNDVNQDFEHIVQDPNFESKHHLSEGDDISSTLDHALTEEQHSNKLSSNSSDSQKNFSCDQCEKLFETKETHDLHFKMAHDRDKLFICTICNKSFTQQAALKHHLSIHEKNKLEKEYPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYICKSCNASFKTKANLINHQSTHTGEKKYFCEICGQQFAHKTSLTLHYRWHTGHKPYTCEVCHKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCAHCNRSFTEQWALKKHLRLHTGEKPYSCDICGKAFADCSNLTKHKKVHRENKLSAISEIEGSPIGEVWQILPSSQESDEHSLTDQIAQVIATDETSGDGIQQIIYVSYQDPDDPNQSRTLHFVDAGMMRNKEEKPNVSQSLSHLNVSNDGMLSNPVHANENNSSNERINVELSESDLQLQITDEEGNPIPLSIQDARQLLSQSQFVNQLSDGQEIRVHPGVIPDELTTPLNVHVNQNSDIKNVDISNTVETKVKNISTVQTDAEAIVKALQDEDTDANAVATINQIEGSEQSGIAENEQAIEFTTQDGQKVRLVTSYHVDPMQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361071;
- 90% Identity
- iTF_01418486;
- 80% Identity
- -