Tmel015597.1
Basic Information
- Insect
- Tetragonula mellipes
- Gene Symbol
- -
- Assembly
- GCA_011634685.1
- Location
- WINE01003883.1:1078-8044[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.094 27 6.9 6.7 1 23 81 103 81 103 0.97 2 17 3e-06 0.00088 21.0 2.1 1 23 109 131 109 131 0.98 3 17 0.06 18 7.5 1.9 1 23 138 161 138 161 0.94 4 17 2.5e-06 0.00074 21.3 1.3 1 23 167 189 167 189 0.97 5 17 0.67 2e+02 4.2 3.9 2 20 195 213 194 217 0.82 6 17 7.2e-06 0.0021 19.8 2.4 1 23 224 246 224 246 0.97 7 17 1.3e-07 3.8e-05 25.3 1.0 1 23 250 272 250 272 0.99 8 17 0.023 6.8 8.8 1.1 1 23 278 300 278 300 0.94 9 17 3.6e-06 0.001 20.8 0.6 1 23 306 328 306 328 0.99 10 17 4e-06 0.0012 20.6 3.6 3 23 475 495 474 495 0.97 11 17 0.0017 0.51 12.3 2.7 2 23 501 522 500 522 0.97 12 17 0.006 1.8 10.6 1.7 1 23 529 552 529 552 0.97 13 17 2.1e-05 0.0062 18.4 1.4 1 23 558 581 558 581 0.93 14 17 0.031 9 8.4 4.2 2 20 587 605 586 606 0.92 15 17 4.9e-07 0.00014 23.5 2.3 1 23 643 665 643 665 0.98 16 17 0.0001 0.03 16.2 0.5 1 23 669 691 669 691 0.96 17 17 1.1 3.1e+02 3.5 4.7 1 14 815 828 815 841 0.81
Sequence Information
- Coding Sequence
- ATGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGACGAAACGAACGTTCAACAACCTTCGAAAGAAGATAGCGTTCAGCCGTCGACGAAGACGAACCAGACGGACGAAAGAGTAAAGGACAGCTCGAGCAGTAGCGATCCTTCCGAGGATCTCGACGACGCGCCGTTGGACTTCCGAAAGAAGCAGGAGCAAGAGAAGAACAAATCGATGAAGCAGCTTCTTCCGAAGAAGAAGGTGCACACCTGCGAGATTTGTTACGCGACGTTCGATCGTAAGAGCAAGCACACGAGACACATGTTCAAGCACAGCAACTCGAGGCCACACAAGTGCCCGGTTTGCGCGAAGGGGTTCAAGACCACCGCTCACCTAACCAGGCACATGGAGGTGCACGACGAGCCGGTCAACCTGCACGCGTGCAGCCTCTGCGACTTCAAGGCACGCACCAAGCCTTACCTCAAGATCCACTACATCAGGAAACACACGGAGGACTACAATTACAAGTGTGAACAGTGCGGGAAGATGTTCAAAGTGCAGTCGGATTACACGACTCACGTGAAGGACCACGATACCGAGTCTTGCGTGTGCGACATATGCGGCTCGTCTTATCCCAGCAAGAGCTCGCTGTACTTTCACAAACATTACAAGCACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACGTGCAAGAAGAAGTTCAAGACGCAGAAGAACTTGGACAATCACATGGAACTGCACAAGATCAAGTACGTTTGCGAGCAGTGCGGCATGGAGTTTAAAACGAAATACGGCCTGACTAAACACCTGAGGACTCACTCAGGCGAGAAGTCGTACCTGTGCGCGATCTGCGGGAAAACATTCGGTTGTCTCAGCTCTCAGAAGATTCACCTGTTGACGCACGTCGGCGAGAGGCCATACGTCTGCGACATTTGCGGCCAGAGTTTCACGCAGAGGTCGCCGATGATGTTGCATCGCAGGAAGCATCCTGGTGTACACCCGCCACCTCCGCCGATTAAAATAACCAACCTGTTGCACGGTGTTCAGGACAAAATAATCGTGAACAAGAGCGGCAAGCGCGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTTGACAAATATTTCCTGCTACCCGTGGATCAcaaagaattaatagaaaagcCCGGCGGAAGGTTATCCATCGCAGGGGGCATGGTCATCAAGTCAGAGGAACACGATATACCGGAAGACACGTCTGAACAATTAGCCGAACCAGCCGAACGAGTCGAGAGGCCTCAGACTGACGAAACTGCTCAATCACTTTCACAGGATCTGCCTGTTGAAATGCCGCTGCAATTGTCACAGTGGTTCGAGCAGGGTTCCAACAGTTCCGCAAGCATTCCAGCGTCATCCACCGGTAACAAGAAGACGTCGAATTGCTGCGACTACTGTTCCAGGGTCTTTCGAAGGAAGTACGAGTTGAAGAGACATTTGGCGACACACAGTAACACACGGGTCGAGTGTTCGGTGTGCCATCAGTTCTTGAAAACGAAGAGGACGCTGAACCTTCACATGAAGCTGCACGAGGAGAGCGACAAGATGTTCGAGTGCTCGGAGTGCGATTTCAGGTCGAAGCGTATGCCAAGCATGAAGCGTCATCAGATCAGGAAGCACTCGATGCACGCCAATTTCAAGTGTGACATTTGCTCGAGAGTGTTCAAGTTGAACAGCGACCTGACGAGGCACAATCAGCTGAAACACCTGATCGAGCCGTGTTGCTGCGACATTTGCGGCAGGACGTATCGAAACATGTTTTTCCTTCGAAAGCACTGGTACTTGGCCAAGAAACGGAAGAAGCCTTGCGATCGTATGCGTTGGAGAGGCATTAGGAACCGAAACGTGGACTATGCGACAGCGCAGAAAAAGGCCGAGTCGAGCCAAGTGTATAATTGTCCCAAGTGCAAGTGGCGATTCAAGAACAAAAGTTTACTGGACAGACACATGCAACGACATTTGCTCAGCTTCAACTGCGACACTTGCGGAGCTGTGTTTAAGTATAAGGCTTCGTTCTTGAAGCATCAAGAAGCGCACAAAAACGAACAAGaGAAAGCAACGCATCGTTTAACGAGGAACAAAGCGGCCGCTGCTAATCGAACGAAAGGCCAATTAAAAGCGTCCCGCAAACCTTCGTCGAGCATTCTTCAAAGACGAATCGCGTTTCGAGTCTCGGAGAACCACAGACGCAGAAGCGGCAGACTACTTTTGAACAACTCCAGTCGAGGCAACGAGACGAAGAACGTGAATTCCGTAAAGCGTAAAAGAATAAACGACGAAGCGAGGACCTCGTCGAAGAATTCTACGAGCAAGAAATTGTCACTGAGTGCCAACAACAATTGCCCGACGAAATTGCGAGAGTCTGGAACGGAACAGGAAGATCTGTACAAGAAGCACGACGGTACTTATACCTGCGATATCTGTCAGACAACGTTCGAACAGAAGAGGAAGAGGAGGACTTACATGATCGAGCACAGGAGGAAACATCCCGACGCTCATTTGTCCTCGCCCCCTGTGCCACTTGGCAGGAAAAGCGTCAGCGAACTGACGGTGTGA
- Protein Sequence
- MFMMKEPPPGSTDETNVQQPSKEDSVQPSTKTNQTDERVKDSSSSSDPSEDLDDAPLDFRKKQEQEKNKSMKQLLPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPVCAKGFKTTAHLTRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSGKRDPLEQTYLVVQNVDKYFLLPVDHKELIEKPGGRLSIAGGMVIKSEEHDIPEDTSEQLAEPAERVERPQTDETAQSLSQDLPVEMPLQLSQWFEQGSNSSASIPASSTGNKKTSNCCDYCSRVFRRKYELKRHLATHSNTRVECSVCHQFLKTKRTLNLHMKLHEESDKMFECSECDFRSKRMPSMKRHQIRKHSMHANFKCDICSRVFKLNSDLTRHNQLKHLIEPCCCDICGRTYRNMFFLRKHWYLAKKRKKPCDRMRWRGIRNRNVDYATAQKKAESSQVYNCPKCKWRFKNKSLLDRHMQRHLLSFNCDTCGAVFKYKASFLKHQEAHKNEQEKATHRLTRNKAAAANRTKGQLKASRKPSSSILQRRIAFRVSENHRRRSGRLLLNNSSRGNETKNVNSVKRKRINDEARTSSKNSTSKKLSLSANNNCPTKLRESGTEQEDLYKKHDGTYTCDICQTTFEQKRKRRTYMIEHRRKHPDAHLSSPPVPLGRKSVSELTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -