Tmel014491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonula mellipes
Gene Symbol
-
Assembly
GCA_011634685.1
Location
WINE01003946.1:1-20036[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.078 23 7.1 0.0 1 20 49 68 49 70 0.95
2 39 0.015 4.3 9.4 1.2 1 21 87 107 87 108 0.97
3 39 0.00034 0.099 14.6 3.0 2 23 149 170 148 170 0.94
4 39 0.00028 0.083 14.8 2.2 1 23 174 196 174 196 0.98
5 39 0.052 15 7.7 2.3 1 23 292 314 292 314 0.97
6 39 2.1e-05 0.006 18.4 0.4 2 23 325 347 324 347 0.95
7 39 0.00038 0.11 14.4 4.9 1 23 353 375 353 375 0.98
8 39 6.5 1.9e+03 1.1 0.1 1 9 379 387 379 393 0.87
9 39 0.011 3.2 9.8 1.5 1 23 476 498 476 498 0.96
10 39 2.5e-06 0.00073 21.3 0.9 1 23 504 526 504 526 0.99
11 39 4.6e-06 0.0013 20.4 1.0 1 23 532 554 532 554 0.98
12 39 0.0068 2 10.5 0.3 1 23 636 658 636 658 0.94
13 39 1.7e-06 0.00048 21.8 1.6 2 23 665 686 665 686 0.97
14 39 1.5e-05 0.0043 18.8 6.0 1 23 721 743 721 743 0.95
15 39 0.00064 0.19 13.7 4.8 2 23 749 770 748 770 0.97
16 39 9 2.6e+03 0.6 0.2 1 10 775 784 775 787 0.84
17 39 4.7 1.4e+03 1.5 0.0 1 10 871 880 871 886 0.87
18 39 0.00016 0.046 15.6 1.0 3 23 1104 1125 1102 1125 0.95
19 39 0.0047 1.4 11.0 2.8 1 23 1129 1151 1129 1151 0.98
20 39 0.019 5.5 9.1 2.3 1 23 1157 1180 1157 1180 0.97
21 39 7.6e-05 0.022 16.6 0.8 1 23 1187 1210 1187 1210 0.96
22 39 0.00055 0.16 13.9 0.6 1 23 1244 1267 1244 1267 0.97
23 39 1.4e-05 0.0041 18.9 0.4 3 23 1570 1591 1568 1591 0.96
24 39 0.22 66 5.7 0.9 1 23 1595 1617 1595 1617 0.96
25 39 0.06 17 7.5 4.2 2 23 1624 1646 1623 1646 0.95
26 39 0.00058 0.17 13.8 0.3 1 23 1653 1676 1653 1676 0.95
27 39 0.59 1.7e+02 4.4 0.2 1 12 1681 1692 1681 1695 0.85
28 39 0.00032 0.093 14.6 1.6 3 23 1713 1733 1711 1733 0.97
29 39 8.6e-05 0.025 16.4 0.8 1 23 1737 1760 1737 1760 0.97
30 39 8.2e-05 0.024 16.5 1.4 2 23 1765 1786 1765 1786 0.97
31 39 2.4e-06 0.00071 21.3 1.0 1 23 1792 1814 1792 1814 0.99
32 39 0.022 6.3 8.9 0.3 2 23 1964 1986 1964 1986 0.92
33 39 0.041 12 8.0 1.5 1 23 1990 2012 1990 2012 0.96
34 39 0.0096 2.8 10.0 2.7 1 19 2018 2036 2018 2041 0.90
35 39 0.00016 0.047 15.6 1.0 1 23 2048 2071 2048 2071 0.97
36 39 0.24 69 5.6 6.9 1 23 2107 2129 2107 2129 0.98
37 39 0.00021 0.062 15.2 1.1 1 23 2133 2156 2133 2156 0.97
38 39 0.0002 0.058 15.3 0.4 2 23 2163 2184 2162 2184 0.96
39 39 0.0052 1.5 10.8 2.7 1 23 2190 2212 2190 2212 0.97

Sequence Information

Coding Sequence
CCGAAAAGCGTGAAGACGATATCACCCAAGCGGAATCAGTCTCGCGGCGTTGAATCGTCCAACGAGGAAGATCGATCGTTTGTCGTTGTCAACGAAGTAAATAACAGCCGCGTCGTCCAGGAGGACGATAATGCGTCGCAACGATATCGATGCGAGTCCTGCGATGAACAGTTCGACACGGAGCCTGCTCTGTTGGTTCACAGAACCGAGCGGTCGATCCTTCGAACTCGCGAGGCACTGAGAAACACGGGAAGAAAGTACACGTGCGACGAATGCTGCGAGAGTTTCGCGAAGAAGGTACAGCTGTTGAAACATCGACGAGGCCGATGCCGCAAAGGATCGGCCAATACGACTGGCAATAAACAGCGCAAACCGAAGGATAAAGCGATAAAAACAAAACGGGAGGGCCAAGAACAACAGGCTGCTGTCTCTAGCGGCCCGATAGAATGCAACGTGTGTCATAAGgttttcaagaagaagaaatatctgAATGTTCACAAAACGTTGCACGGGGCGCCACACGTTTGTCACGTGTGCGGCGCCAAACTGACCTCCGAATATTACCTGAAGATTCACATTAGGAGACACAACAAGGAGTTCACTGAATTCTGCGAGGAGATCGACGCCGAGGAACCGAAAATAGAACAAATGGAAACGCTCGAGGATATGGAACTGGTGAAGTATGAGAGTGGCATGTGCACAGTCGAGGAGTTCGAACAGATTAGTCACCAAGAAATCATAGCTGACACGTTGGCAGAAAGTCAAGACAGCATGGACATAAAAGTGTCGCTTCAGGAGGACGAGGGACTTCATTCAATGAACGCGAATAATGTTTTCGCCAAGAAATACGAGAGCAGGAAATGCTCGATCGTTTACGAATGCGACATTTGTAACAAGAGGATGCGCAAGAAGCTTCAATTCCTGAAGCACAGGCAGGACCACGAGAGGAATGACGAGGAGGCTGGAATGGATCGTTGCGACGAATGCGACAGAAGTTTCACGGACGAGGAGAAACTGCGAAAGCACGTGATCAAGGTGCATCAAAAGGAGAAACCTTTCCAATGCGTCCTCTGCAATAAATGCTTCAAAACGGAGGAATTCCTGAAGACTCATCTGAAGCAGCACAACAAACGTTTCACGTGCGATATCTGCGGGATCTCGAAGGTATCGCCGTCAAGTTCGAGGATCGAACCATCGGCACGACATATGATCACGGATAGATCAGCGGTTTTacaaacgataaaagaaaaagaggatcaTTCGACGACGAACCAGTGTGAAAATGACTGGACTCCTCGAGATACTCGTTGCGCCAGTTCGATTCAGAGAACTCTGACCGAGAACGATTCGAACAACGACGTTGCAGAAGTACCGAAAGAGACGAAAAGCGAGGAGAAGCATCCTGATTCATTGGCGCAGACGTTCTATCAGTGTGAAATGTGTCGAAAACTTTTCAGGACGAAAAATTTGTACGAAGGCCACCGAGTGTCTCACAGCGACGCTCGACCTTATCAGTGCGATATCTGCGAGAAATCCTTCAAGAGGACCAATACACTCGCCGTTCACAGAAGGATCCACACTCGCGAGAGGAACTTCGTGTGCGACGTATGCGGACACGCGTTCGTTCAAGCTTTCCAGCTGACCACTCATCAGAGACGCCACTTCGACAAATACAACCAGTTACCCTTCTCCGAAGAGTATTACCCGATGGCGATGTTGACGAAGCTCGACTTGATGAAGAAGGACGCGGACTCGGAGAGCACGAACTCGGCCGCGAAGTCCGCGGACCTGGCTGCTGCTGCGCCCGGCAACAACGCGACCATCCTGCCGATGAACGAGGAGCAAAGCAACTTTATCAAGCAAGAAGTgaacgacgaggacgaggaagaGGATCTACCGTTGGCTTACCACTGTAAACTGTGCGGTGTGTTTTTCGCTTCGCAGGCACTGCTGGACAATCACGAGATCGAGCACAAGGGTAAACGTAAAAACACTTGCGCCCAGTGCGGCCGGGTGTTCAGAACGTACGTGAATCTGCGAAAGCACATGAAGAAGCACGCGGGTCGCAAGGGTGGGCGTAAAGCGGGGGGCGGTGCGTCGACGATGGCGAGCAGTCGTTCCGGTACACTGAAGGTAAAGAAAGAGAAGCAGGAGCTGGAGTTCCTCTGTAAAACGTGCAACAAAGTGTTCCGGCACAAGAGCAACTACCAGAAACATCTGATGCGGCACACTGTCGGCGACTTGACGTGCAAACACTGCCCGAAGAAGTTCCGCCTGTTCCGCGATCTGACCAGGCACGAGAAGACTCACTTCTATCCCAGTTACATGTGCAAGGAGTGCGACTACGAGACTACCGTAGCTCTCGGTGTCGTAGATTGGGACGCGAGATCCAAAGTGCGCGGTGAACAGGCCGTCGAGATCTTCGAATCTTCGAGATCAAAGTCTCCGTCGTCAGAACCATCGCCGGAACAAGAGAGGAGACCATTGTCTAACAGAAAAGATCAGATCTTAAAGGAAGCCAACTGCTCTGCGAATTGCTCCGACAGCCACTCACTGACGAGTTCAACcggaaggaggaagaagaacagCAAACACGAAGGGCATGAACGATACGTCTGCTCCATCTGCAAGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGACCGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCAACGATAGGCGTCTCCTCGATGCCCTGGAAAATTGAGATAAATCGGGACGAGGATGACGAGACGATGACGACTAGAAACGACGAAGATAGTGTAAACGACAATGATTCCTCTTTAGGGAGAATAGTAGCAGAGGATTCAATCGTGGATTCAGTGAAGACTGTTTTGGTACCTGTTAGAGACCCAGTGACGAAGCAAGTTAGAAATGTGTTGGTGCCTGTTGAAGAGATGGACGATACTGGATTGAACGTCATCAAAAGTGTACTGATACCTTTGCAGGAGCAGGATGGGTCGATTTCTTATGAAATTAAGAAAGTCGTAGTGCCTATCAACCCGGAATTCAGCTTGCCACCGAGAAAAAAGGCCGAAGCTAAGTCATTGACGAATAAAATCAAAGGTACGCAGGtgaattgtaagaaaaaagaggaaaaagcaaccgaagagaaaaataagatatCGTTTGATACTTTTAGCGAAGAAGCTAAGggacaagaagaaaaagtgagGAAGCAGAAGGAAACGGAGGAAATAGAGAAACTACCAACGGATGCATCGAAGGGAGAAGTAGATCAGATACTGGACACCTTAAGAGACATTTGTCCATTCTGTCAGAAACGTTTCAAGGACGAAAACCAGATGCAGAAGCACATTCTAAAAACACACAGGAAGCCCTACAACTGCGACAAGTGTCACAAAGGATACTTCACCGACTTCGCGCTGGAGGAACATCAGAAAACGCACGAGGTGGTCTCGTTTTATCAGTGTTCCGTTTGCCAGATGCAGTACAAGACGACGACGGGATTGAAGTATCATCGGATTCGCAAACACAGCGACATTGACCCGATATTCACGTGCGATTACTGTGGCAAGCGATTCAAACTGAAGTTGGACTTGAGTGTTCACATCGACAGATCCCACATGAACGTCACTCACATTTGCAGATTTTGCGGCATGGCCGTGAAGAACATCGTGTATCACGAGTTGAAGCACGAGAAACATAAGAAGGCCAGCTCTCTTTATCGTTGCAGCGTCTGCCCTAGAAAATTCAAAGCGTGGAACAGATTGGAGAACCATTTGCTGATGAAACACAAATCGCCCGATATGAATACGACGACGACGGAAAGGGCCAAACCATCGAGCCTGATGCAACAGCTCGTTATATTTTGTCGCAGAATGCCGGACCGGACGAATGTTAGTCGAGTGCCTGTCTCTCTTAAAATTAATCCGGCTTTCGTACGAAGCTCGAGGGAAtgtaaaaaaatcgtacaaaattcTAACGAGTCACGCACGTCGAAGAGAGTTGCAGACAGTTTAACCGATAGTTTAACCACGCGGAATGAAATGAACGTCGATTTGATCTCGAACGGGAATGTTGTAAGTAATAGCATTTGGTTGAGTCCAGTTGACAGTGATTCATCGTCGACTGGAACGAATAACTGTACGAATACTGAATCAGGAAAGATTCAGCAAGATACAAAGATAGATTCGGTGAAACAGGTGTTGGTTCCAGTCAGAGATCCGGCGACCAACGAGATTAGAAATACGCTGGTGCCAGTCGAGAACGCAGACGCTTCTGGATTGAAcgtgattaaaaatattctgataCCGATTTCCGATAAAGATGGTTCGATATCGTACGATGTGAAAAAGGTCGTGGTGCCTATCAAGCGAGAGTCAAATTTGAATCGAACACCAGGGAATAAGGTAATAATAAACATAGTGCAGCCAGTGAAGAACGTGGAAAACGTGAGTACTCCAACGACGTCGAAAGACTCggagaacgaaatgaaattgccAGAGGACAATGAGAAGCCGGTACAGGTGGTACAGGTGACATCAGTCGAGAATAAAGTGCAGTGCAAAACAGAAGAATCGACAGATGCCCAAGTGGAGCAGAGAAAGGAAGAGCAAAAGGAGACAGAATCGTTCAAAGTGCCTGGCCCAGCAACCCAGAAAGAGGAGATGGACCGAATACTAGAAAATTTGAAGACTATCTGTCCAGTTTGTCAAAGGGTGTTCAAAAGCGAGATCATGTTACAAAGGCACATACGTCGATTCCACGAGAAGGTGCATCCGTGTGACAAATGTAACAAATGGTATCCATCGAAACTGCTGCTGCAAGAGCACAAGATATCTCACGAGGACGACTCGTACCTGCAGTGTTCGATGTGCCACTTGAAGTACAAGCGTAAAATTGGACTGAAGTACCATCACATTCGAGTGCACAGCAACATAGAGCCGAAGTACATGTGCGACTACTGCGGCAAACGTTTCAAGTTGAAGATCGATCTCGGCGGCCACATCGAGAAGACGCATCTGAACGTCTCTCACATCTGTAAGATTTGCGGCAAGGTCGTGAAGAACATCACGCACCACGAGTGGCAGCACGACAGGGTCGCCAAAAGGATCGTTTACAAATACGGTTGCAACCTTTGTCGTAAGAAGTTCACAACACGCAACAATTTGGACAATCATCTGCTGATGCACAAGGACGGCTTCAAGTGTACGCTGTGCGACGAGGTGTTCTCCTCGCCGTATTCTCTCGGCAGTCACAAGAGCACGAAACACAGACGCGGTGCGACGTGCACCATCTGCGAGAGATCGTTCACAAGTACGAGCAATTTTTATCAGCACGTGCTCACTCACGCTGGCATCAGGCCGTACAAATGCGACATCTGCGGCGAGGATTTCACGCAGCGATCCAGCGTGCTGAGGCATCGAAAGACTCATCCTGGCCCTCTTCCACCGTTCACCGAAACCACGTCGATAGCGGATATCGCGAAGAACATATTGCAGAAACTTTCGAACtacacaattatttttacaaataatttatctaatccTAGCTCACTGACGTATCACTATCCTTGTTTCAGAGAAGAACCTATCCCAGGACAACGaagaaaccgagagagaaattcgTCTTACTGTTTAACAGCGGTCGATAGCGGACGATCaagaagaagattgaaaagTCGCACGAAGTCGAAATATCTGCCGGGCGATTCCATCGATTCAGACGACTTTGAGAATTCACAGGACTTGGCACTTCGAGGAAATTCGAATAGACTAAAGCCAGGCGTCCAAACGTCCTCCTCGCTGACGAAAGAAACCGAATCTGCCCGTTCAAAGAAAGACGAAGTCGAAGTGGATCGCGTGCTGGACAAGATCAAGAACACCTGTCCCTTCTGTGAGAAGCGTTTCGACGACGCAAAGAAAGTGGAGAACCACGTGACGTACGTGCACCGAAAACCGTACAAATGCGACATGTGTAAAAGAGCGTATCACACGGTTCGTACGCTGGAGGAGCACAAAGTGATCCATCGGCCGGATTACTTTTTCGAGTGCAAGATCTGCCACGTGAAGTACAAGAGCGAGAACAGCTTGAAGAGGCACGACATGCGCACGCACGGCGACTACGAGTCGAAATACGTGTGCGAGCTGTGCGGCCGTAGTTACAAGCTGAAGACAGACCTGACGTACCACGTGAAGAGATCGCACGCATCGGAGTTGCAGATTTGCCGATTCTGCGGCAAGGAGGTGAAGAACGTGAAGGGCCACGAGTGGAGGCATCAGAAACGCAGCAAAGAGGCAAACAGGTACGAGTACACTTGCCACCTGTGTCGCAAGAAGTTCCTCCACAGGAGCAGGCTAGACAATCACCTGAGGCTTCACGAGAAGGGTTTCAAGTGCGAGGAGTGCGGCAAAGAATATCGTGGTACCCGCGAGTTGATCAGTCACAGAAGATACAAGCATGGCCAGGCGAAGATACTGACTTGCGTTTTGTGCCAGAAAGCCTTCCCCTCGAGCAGTAATTTTTATCAGCACGTTCTGACACACGCCGGCATCAGGCCTTACAAGTGCGACGTTTGCGAAGACGACTTCACGCAACGTTCCAGCCTTCTGAGACACAGGACGCATCATCCTGGACCACTTCCGCCACTGCACTCGTCTCGTCCGCAGATTGCTGAATTAGCCAGGAGTTATCTGCAGAAATTGCAAAGTGACAAGAGTTGCGTCTTTGACGCGAGATTATGA
Protein Sequence
PKSVKTISPKRNQSRGVESSNEEDRSFVVVNEVNNSRVVQEDDNASQRYRCESCDEQFDTEPALLVHRTERSILRTREALRNTGRKYTCDECCESFAKKVQLLKHRRGRCRKGSANTTGNKQRKPKDKAIKTKREGQEQQAAVSSGPIECNVCHKVFKKKKYLNVHKTLHGAPHVCHVCGAKLTSEYYLKIHIRRHNKEFTEFCEEIDAEEPKIEQMETLEDMELVKYESGMCTVEEFEQISHQEIIADTLAESQDSMDIKVSLQEDEGLHSMNANNVFAKKYESRKCSIVYECDICNKRMRKKLQFLKHRQDHERNDEEAGMDRCDECDRSFTDEEKLRKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSPSSSRIEPSARHMITDRSAVLQTIKEKEDHSTTNQCENDWTPRDTRCASSIQRTLTENDSNNDVAEVPKETKSEEKHPDSLAQTFYQCEMCRKLFRTKNLYEGHRVSHSDARPYQCDICEKSFKRTNTLAVHRRIHTRERNFVCDVCGHAFVQAFQLTTHQRRHFDKYNQLPFSEEYYPMAMLTKLDLMKKDADSESTNSAAKSADLAAAAPGNNATILPMNEEQSNFIKQEVNDEDEEEDLPLAYHCKLCGVFFASQALLDNHEIEHKGKRKNTCAQCGRVFRTYVNLRKHMKKHAGRKGGRKAGGGASTMASSRSGTLKVKKEKQELEFLCKTCNKVFRHKSNYQKHLMRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVALGVVDWDARSKVRGEQAVEIFESSRSKSPSSEPSPEQERRPLSNRKDQILKEANCSANCSDSHSLTSSTGRRKKNSKHEGHERYVCSICKRSTIAETSLDQGRNDRPQFQVTVPASSPTIGVSSMPWKIEINRDEDDETMTTRNDEDSVNDNDSSLGRIVAEDSIVDSVKTVLVPVRDPVTKQVRNVLVPVEEMDDTGLNVIKSVLIPLQEQDGSISYEIKKVVVPINPEFSLPPRKKAEAKSLTNKIKGTQVNCKKKEEKATEEKNKISFDTFSEEAKGQEEKVRKQKETEEIEKLPTDASKGEVDQILDTLRDICPFCQKRFKDENQMQKHILKTHRKPYNCDKCHKGYFTDFALEEHQKTHEVVSFYQCSVCQMQYKTTTGLKYHRIRKHSDIDPIFTCDYCGKRFKLKLDLSVHIDRSHMNVTHICRFCGMAVKNIVYHELKHEKHKKASSLYRCSVCPRKFKAWNRLENHLLMKHKSPDMNTTTTERAKPSSLMQQLVIFCRRMPDRTNVSRVPVSLKINPAFVRSSRECKKIVQNSNESRTSKRVADSLTDSLTTRNEMNVDLISNGNVVSNSIWLSPVDSDSSSTGTNNCTNTESGKIQQDTKIDSVKQVLVPVRDPATNEIRNTLVPVENADASGLNVIKNILIPISDKDGSISYDVKKVVVPIKRESNLNRTPGNKVIINIVQPVKNVENVSTPTTSKDSENEMKLPEDNEKPVQVVQVTSVENKVQCKTEESTDAQVEQRKEEQKETESFKVPGPATQKEEMDRILENLKTICPVCQRVFKSEIMLQRHIRRFHEKVHPCDKCNKWYPSKLLLQEHKISHEDDSYLQCSMCHLKYKRKIGLKYHHIRVHSNIEPKYMCDYCGKRFKLKIDLGGHIEKTHLNVSHICKICGKVVKNITHHEWQHDRVAKRIVYKYGCNLCRKKFTTRNNLDNHLLMHKDGFKCTLCDEVFSSPYSLGSHKSTKHRRGATCTICERSFTSTSNFYQHVLTHAGIRPYKCDICGEDFTQRSSVLRHRKTHPGPLPPFTETTSIADIAKNILQKLSNYTIIFTNNLSNPSSLTYHYPCFREEPIPGQRRNRERNSSYCLTAVDSGRSRRRLKSRTKSKYLPGDSIDSDDFENSQDLALRGNSNRLKPGVQTSSSLTKETESARSKKDEVEVDRVLDKIKNTCPFCEKRFDDAKKVENHVTYVHRKPYKCDMCKRAYHTVRTLEEHKVIHRPDYFFECKICHVKYKSENSLKRHDMRTHGDYESKYVCELCGRSYKLKTDLTYHVKRSHASELQICRFCGKEVKNVKGHEWRHQKRSKEANRYEYTCHLCRKKFLHRSRLDNHLRLHEKGFKCEECGKEYRGTRELISHRRYKHGQAKILTCVLCQKAFPSSSNFYQHVLTHAGIRPYKCDVCEDDFTQRSSLLRHRTHHPGPLPPLHSSRPQIAELARSYLQKLQSDKSCVFDARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-