Thoc037741.1
Basic Information
- Insect
- Tetragonula hockingsi
- Gene Symbol
- -
- Assembly
- GCA_010645185.1
- Location
- WIUV01011974.1:1-6474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.2e-06 0.0015 19.9 0.9 1 23 217 239 217 239 0.98 2 21 0.0045 0.84 11.3 3.7 1 23 262 285 262 285 0.96 3 21 6.7e-05 0.012 17.0 0.5 2 23 292 314 291 314 0.96 4 21 0.014 2.7 9.7 0.0 1 21 335 355 335 356 0.94 5 21 0.0059 1.1 10.9 0.2 2 23 452 473 451 473 0.96 6 21 0.0073 1.4 10.6 0.9 2 23 480 502 479 502 0.91 7 21 5.9e-05 0.011 17.2 0.1 1 23 569 592 569 592 0.96 8 21 0.012 2.2 9.9 0.4 1 23 598 621 598 621 0.96 9 21 0.031 5.7 8.6 0.8 1 23 634 656 634 656 0.97 10 21 1.8e-05 0.0033 18.8 0.9 3 23 700 721 699 721 0.96 11 21 0.00063 0.12 13.9 0.9 2 23 781 804 780 804 0.95 12 21 1.6 2.9e+02 3.3 0.0 2 23 813 835 813 835 0.84 13 21 0.02 3.7 9.2 0.1 2 23 842 864 841 864 0.95 14 21 6.5e-06 0.0012 20.2 1.2 1 23 872 894 872 894 0.98 15 21 0.55 1e+02 4.7 0.8 8 23 928 944 920 944 0.83 16 21 0.0001 0.019 16.4 3.3 1 23 947 970 947 970 0.97 17 21 0.00031 0.058 14.9 0.6 2 23 977 999 976 999 0.96 18 21 0.00045 0.085 14.4 3.9 1 21 1023 1043 1023 1044 0.95 19 21 0.0013 0.25 12.9 1.8 2 23 1058 1079 1057 1080 0.93 20 21 0.22 41 5.9 1.4 1 23 1083 1106 1083 1106 0.94 21 21 0.013 2.4 9.8 1.3 2 23 1113 1136 1112 1136 0.92
Sequence Information
- Coding Sequence
- ATGGAGTCCAAGGAACGCTACCAGGAGCTCTGTCGACTTTGCGCCTCCTACGACGCCGTCAAGATGGACATCTTCGGCCAAGAGGGCAAGAGCAGACAGCTCGTTGACAAGATACAAGCCTGTCTGCCGTTTAAGattGCAGAAAATGATCGGCTACCAAAATGCCTGTGTTATAGGTGTATGtacaatttggaaaatttctatGACTTTAGAACAGCATGTGTTAATGCAGTTGCTCTCTTGGAAAGATGCTTATCGCCTTCAGGAccgaatGGAGATGTTACTACCATCTTGACATGTAGTAATGATTCAGAGTTCttcaaaggaagaaaaagtatACCAGTCCTAATTCCAGAAGCTCCTATTGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTAAATTCTGATGGAGAGGCTGACCATGAGATAGAAGAAATTGATAATAGCGGCACAGATGAAGcAACAGTCGTGGATGATTCTGAAGATCATCATTCAGAGGAGTATGAAATGGATATGGAAACAAATCCTAGTGATTTTTTGGAAATGACTTCAATAGTTACAGAAGAACCTGAAGAATCAGAATTGAAACATCAGGATATTTCCAGTAACTTGCCAGagcACACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTATCTTTACATGCACGCATTCACGTTGGTGCGGGTGACGTGATTGGCGAAAAAGTTATTACAgatgatcatacatcgtataaaAGGCCCTACCAATGTGATCTTTGTCATAAATCTTATTCCACTGCAAAACATCGTTGGGGTCATGTTTCTACAACTCATAGAGGTCATCCAGCAGTGACATGCGGTTATTGTTCTCGGATTTACTCAACTCGAACAAATTTGGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAGCACCTACAGAGATTTCACTGAATAATGCCTATCAGtcggaaaataaatatcagtgCAGTGCTTGTGGGAAGATTTGTATAGATGCCATGGAACTGAATCTTCATGGTAGAATTTGTACCGAAGGACAAAGATTAGATCTTCCagggaaaaacgaaattagggataataaaattgtagataGTTCCGAAGCTTCAAGTATTGGAAGTGACGATGATGGCAAAGATTATAGaAGTGCAGAAGCTAAATTGGCAAAAAATCCTCagttaacaattttaaaacaagCATTAACAAAAGGAGATAGTCTTAAGCGAGATTTTGAAGATAAATTTACTTCAAATTGCAAACCaaaaaaattgccaaaaaCAGaGCATTCTGATTTTCAAAATAGTAAGAAATGGTATTGCGAATCTTGCCCTCAGTGTTTTATTTCAGTTGAGGATTTAAGAGAGCATGAAGCAACTCATTTTACGGATAAAccatttatttgtattttatgtcAAAAAGACTTTTTCCTTAAATCTTCCTTAAGCAGGCATATTCAAACCTTACATGGAGTTGATCCATGCCCTATAATAGAAAGTGAtaagtgtttaaaaaaagttgtttCGCATAATTGGAATGAATCTATGGATATTGATTCGTATGAGGGTAAAATTTCTTCTGAATTTCCACTATCTCCAgagataaatgtagaaaatgaagaagaccACGAGAGTGGACAAGAAAATCTtatcgaaattgaaactgtatttgtttgtgaaatttgtaCTCGTGATTTTAATGATCGTGCATCTCTCTGGCTTCATATTCGTGCTACGCATAAAGAATTTGCAGCATTTGCATGTGgtgtttgtttgaaaatttgtgcAGACAATACCCAACTTTTGAACCACGTAAACATGTATCACGGTGgttcaaaattattactttctgAACAAAGAAGGTACAGTTGCACTATTTGCGGTAGGCAACatgattcgagaaaaaaattaattgcccATGTATCCATACATAGTGTAGATCCAACTTATGATCCTGCTACCTTTGTTCAATTGAATAGTAATTATTACGGAGAGAATATTAATGGTAATGAAACAGCAGAACAAATGCTCGACTATGAAGAAGACGCAGATAAAGTAGattgttatatttgttataaatcaTTTCCTAATGAGGATCATTTGATACGACATCAGAGAAATGCACATAGatcGGAACAACTAATGCCAACAGGAGATACTTTAAATCCGTCGAGTTTAAATGGTGGTGGAAACAGAGCTCAATAtcaccttttttttgtttgtgaACTTTGTGGGAGTTCACATCATAGTAAATGGGAACGTTGGCTACATGTTAGCTCGTCTCATAGCAATGAATCGGCCATAAAATGTGATCGTGAAGACTGTGGTAAAATTTTTGCTACAAAATCTCTTAGAAATGAACATATTCAACATCATGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATCTGCGGTAAACTTTGGGGCAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTACATTCGGATACCGTTCCATTAATTTGTGGCGTCTGTTTGAAAGTGTTCCCAAATGTTTTACAATTAAGCACTCATGTGAGGTCGAAACATTGGCCGTTAACTAATGGTGATTTTAGTTGTGATATTTGTGGAAGACcatattcgaataaatccaaaatgtCTAGACACAGAAAGATCCATGGTTTTGAAGAAAACTGTGATAACGGAGCAGAgaatttcgataataaaattgatggACGAATGAGAGAAACAGAACTAAATTGCGAGCTGTGTGcagatttgaaatttactagcttagaaaaattatgtaatcaTAGACGAATCGTTCATGGACTTTTCCCTTGTGATCTCTGTAATAAATGCTATGGCAGAACTTCGCATTTATGGAAACATGTGAACAGAGTTCACAAAGGCCATGAAGATGTAACTTGTCCTTATTGTTTGAAAACTAGTGCTTCGAAAGATCATTTAGCAACtcacatttcaaaaattcatagaTACGAACCAGATTCTAGAAAAGATGGAAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTTTGCATTActgtgaaaaatgtaataaaggATTTCATAAGCGGTATCTTTTACGCAGACATATGAAAGGATGTCAGAATTACAGAAAAGATCCTGGGGCATTATTAACAAGATGCAGAGCTTGCGAAAGGATATTTAAAGATCGTGCCAGTTTGCAAAAGCATATTGAGAATCATCATAGTACATACACATGTCATCTTTGTAATGAGACGATTACTTCAAAATTAGGAATTATGACACATAACAGAGTGAAACACATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTGGAATCTCATAGAAAAGATCACAG
- Protein Sequence
- MESKERYQELCRLCASYDAVKMDIFGQEGKSRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSGPNGDVTTILTCSNDSEFFKGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHEIEEIDNSGTDEATVVDDSEDHHSEEYEMDMETNPSDFLEMTSIVTEEPEESELKHQDISSNLPEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEISLNNAYQSENKYQCSACGKICIDAMELNLHGRICTEGQRLDLPGKNEIRDNKIVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTSNCKPKKLPKTEHSDFQNSKKWYCESCPQCFISVEDLREHEATHFTDKPFICILCQKDFFLKSSLSRHIQTLHGVDPCPIIESDKCLKKVVSHNWNESMDIDSYEGKISSEFPLSPEINVENEEDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHSVDPTYDPATFVQLNSNYYGENINGNETAEQMLDYEEDADKVDCYICYKSFPNEDHLIRHQRNAHRSEQLMPTGDTLNPSSLNGGGNRAQYHLFFVCELCGSSHHSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEENCDNGAENFDNKIDGRMRETELNCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLESHRKDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00228116;
- 90% Identity
- -
- 80% Identity
- -