Thoc003070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonula hockingsi
Gene Symbol
-
Assembly
GCA_010645185.1
Location
WIUV01001506.1:16785-25109[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.9e-05 0.0072 17.8 1.4 1 23 447 469 447 469 0.96
2 15 0.0023 0.43 12.2 1.6 1 20 475 494 475 497 0.94
3 15 9.6e-06 0.0018 19.7 1.4 1 23 503 525 503 525 0.98
4 15 5.6e-05 0.01 17.3 4.4 1 21 531 551 531 553 0.95
5 15 7.5e-06 0.0014 20.0 5.6 1 23 559 581 559 581 0.99
6 15 1.7e-05 0.0032 18.9 5.3 1 23 587 609 587 609 0.97
7 15 6.5e-05 0.012 17.0 6.9 1 23 615 637 615 637 0.96
8 15 6.4e-08 1.2e-05 26.5 2.7 1 23 643 665 643 665 0.98
9 15 4.7e-05 0.0088 17.5 6.7 1 23 671 693 671 693 0.97
10 15 1.5e-05 0.0027 19.1 5.8 1 23 699 721 699 721 0.98
11 15 3.9e-07 7.3e-05 24.0 2.9 1 23 727 749 727 749 0.98
12 15 5.8e-06 0.0011 20.4 7.8 1 23 755 777 755 777 0.98
13 15 1.8e-05 0.0034 18.8 9.1 1 23 783 805 783 805 0.98
14 15 2.4e-05 0.0045 18.4 7.5 1 23 811 833 811 833 0.98
15 15 0.25 46 5.8 3.9 1 17 839 855 839 858 0.88

Sequence Information

Coding Sequence
ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGAAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAATCAAGAAATGGCGTTAACTTCCAGTTCACATCATCAATCAACACCTAcacatcatcatcatcaatcTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGcAGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGACCACATATACCTGCCAGCGTCAGTCATTTACAGGCAGCACATGCACAAATGCAGCAACAAATGCAGGCAGCACAACAGCAACAGCTGCATCAACAGCAGCAAccacaacagcagcagcagcaacaacaacaacaatctCACCATCAAATGCAAAATCATCAAAATGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGGGATGATAACAAAGTGAAAGATGAAGGTGGAAGTTGTACAACTGAACGTTGCAGTGAGAATCAGGTTCACTGTCAAGTTCAATGTGACCTTCAATTACAAACATCTCAGGATTTACAACAAAGTCTTatgcaacagcaacagcagcagcagcagcaacaaatTGGCGTGAACATAAGTGGGAATTCATCGAACGAAAGCGGAAGTCAAAATAATACAGAGAAacctgaaaaagaaaaagaattgcgTCAACTAAATATGACGCAATTTCAAGTGCCAGATTTAAAACCAGGAGGTCACATGATGGATGTAAGAACAGCTGATGGCTCAGTTGTGAAAATCAGTGCTGGAAATGAGCAAGATTTAGCAAAAACACTCGGTGTTGAAATGGTGCAAAATATGTATAAGGTAAATGTCGAGGATATTAATCAACTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACTTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAGAATGGAACTCCAATTGTACAACaagttcaattaaataaatttgatattaaatcaAGTGATGGTGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGCGAAATATGtgggaaaatttttcaatttcgctaTCAGCTTATTGTTCATCGTAGATACCATACGGAAAGGAAACCTTTCACTTGTCagGTGTGTGGCAAAGCctttttaaatgcaaatgaTTTGACACGGCATGGAAAATGTCATTTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTGGAACGTCATATGAAGCGACATGCTACCGATAAACCATATAATTGTACTGTATGTGGGAAAAGTTTTGCAAGAAAAGAACATTTAGATAACCATACGCGTTGTCATACTGGAGAAACACCTTACaggTGTCAATATTGTTCAAAGACTTTTACTAGGAAAGAACACATGGTAAATCATGTTCGTAAACATACGGGTGAAACACCTCATCGATgtgatatttgtaaaaagagCTTTACTCGCAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGCCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTCTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTTCGCTGTCAATACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGACAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCACCGCATAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCACACCGGAGATTCGTCGCACTGTTGTAACGTGTGTTCAAAACCATTTACAAGAAAGGTAAGCTACAAGTTTCACGAGTTTTTGCCAAACATGTTTACATTAAATGcgaataatatgatataa
Protein Sequence
MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQSSVSSSSHHSSLQPNSQQIPVSLPGLNLDGPHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSENQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQQIGVNISGNSSNESGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKVSYKFHEFLPNMFTLNANNMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01066407;
90% Identity
iTF_00899003;
80% Identity
-