Basic Information

Insect: Tetragonula hockingsi
Gene Symbol: -
Assembly: GCA_010645185.1
Location: WIUV01004576.1:5994-8865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.091 17 7.1 7.6 1 23 7 30 7 30 0.96

2 20 3.2e-06 0.0006 21.2 0.3 1 23 36 58 36 58 0.97

3 20 1.9e-05 0.0036 18.7 1.4 1 23 64 86 64 86 0.97

4 20 0.00029 0.055 15.0 0.4 1 23 92 114 92 114 0.98

5 20 4.3e-06 0.00081 20.8 7.4 1 23 120 143 120 143 0.98

6 20 0.00024 0.044 15.3 1.2 1 23 160 183 160 183 0.96

7 20 0.0098 1.8 10.2 0.6 3 23 195 215 193 215 0.95

8 20 1.3e-06 0.00024 22.4 0.4 2 23 222 243 221 243 0.98

9 20 8.3e-06 0.0016 19.9 1.7 3 23 251 271 249 271 0.97

10 20 9.9e-06 0.0019 19.6 0.5 1 23 277 299 277 299 0.99

11 20 0.1 19 7.0 0.7 2 23 347 369 346 369 0.96

12 20 1.1e-05 0.002 19.5 0.9 1 23 375 398 375 398 0.97

13 20 0.53 99 4.7 0.4 2 23 404 425 403 426 0.93

14 20 9.7e-05 0.018 16.5 0.3 2 23 432 453 431 453 0.96

15 20 0.0011 0.2 13.2 1.4 1 23 459 482 459 482 0.95

16 20 6.1e-05 0.011 17.1 2.1 1 23 507 530 507 530 0.93

17 20 0.002 0.37 12.4 0.1 1 23 541 563 541 563 0.95

18 20 0.0077 1.4 10.5 3.6 1 23 569 591 569 591 0.94

19 20 4.8e-07 8.9e-05 23.8 1.1 1 23 597 619 597 619 0.98

20 20 1.7e-05 0.0031 18.9 0.1 1 21 625 645 625 646 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.091	17	7.1	7.6	1	23	7	30	7	30	0.96
2	20	3.2e-06	0.0006	21.2	0.3	1	23	36	58	36	58	0.97
3	20	1.9e-05	0.0036	18.7	1.4	1	23	64	86	64	86	0.97
4	20	0.00029	0.055	15.0	0.4	1	23	92	114	92	114	0.98
5	20	4.3e-06	0.00081	20.8	7.4	1	23	120	143	120	143	0.98
6	20	0.00024	0.044	15.3	1.2	1	23	160	183	160	183	0.96
7	20	0.0098	1.8	10.2	0.6	3	23	195	215	193	215	0.95
8	20	1.3e-06	0.00024	22.4	0.4	2	23	222	243	221	243	0.98
9	20	8.3e-06	0.0016	19.9	1.7	3	23	251	271	249	271	0.97
10	20	9.9e-06	0.0019	19.6	0.5	1	23	277	299	277	299	0.99
11	20	0.1	19	7.0	0.7	2	23	347	369	346	369	0.96
12	20	1.1e-05	0.002	19.5	0.9	1	23	375	398	375	398	0.97
13	20	0.53	99	4.7	0.4	2	23	404	425	403	426	0.93
14	20	9.7e-05	0.018	16.5	0.3	2	23	432	453	431	453	0.96
15	20	0.0011	0.2	13.2	1.4	1	23	459	482	459	482	0.95
16	20	6.1e-05	0.011	17.1	2.1	1	23	507	530	507	530	0.93
17	20	0.002	0.37	12.4	0.1	1	23	541	563	541	563	0.95
18	20	0.0077	1.4	10.5	3.6	1	23	569	591	569	591	0.94
19	20	4.8e-07	8.9e-05	23.8	1.1	1	23	597	619	597	619	0.98
20	20	1.7e-05	0.0031	18.9	0.1	1	21	625	645	625	646	0.96

Sequence Information

Coding Sequence: ATGACCTCCCGAGCGATTCACGAGTGCGTGAAGTGCGGCGCCTGTTTCTGCCACACGAGGAAGCTGGTGGAACACCTGAAGAATCTGCACGGCATCGACAGAGCGTTCAGCTGCGACGAATGCGGCAAGACATTCCGCAGTCCTATGAACATAGCCCGGCACAAACTGATTCACACCGGCTCGAAGAGATTCGCCTGCGACTTGTGCGACTACAGATCGAACCAAAAGTCGAATCTCGAGAGCCACCGTCGGCGACACACCAAGGACTATTCGTTCAGATGCGAGCGCTGCGGCAAGGGCTTCGTCCTTCGAACGGAATACCTGGAACACGTGAACACCCACACGAGAAAGCAGCTGTATCGATGCGATCACTGCAACAAGTGCTACCCTTACAAGAAGAACCTGACTAATCACCTGAGGACGCAGCACGCTGGCGTTCTGCCGCTGGAGGTGAAAAACGACGAGAGACGATACAGGCACGTGTGCACGATTTGCCTGGAAGCTTTCGCGCGGAAATCGTTCCTCGAGAGCCACTTGAAACAACGACACGGActgtcgaacgaacgaacgacgaggCACTTGTGCGATCTGTGCGGGGCAGTGTTGTCGTCGAAGAGGCGGCTGATGGTGCACAGACGGGGCCACGCGGACGAGAAGATCGTCAAGTGCGATTTATGCGACAAACAGTTCGCCAGCAGGGAGAACCTCAATGTTCATCGGCGTGTGCACACCGGGGAGAAACCGTACGGTTGTTCGCAGTGCGGGCGAAGATTCACGCAGAGAACGTCTTTGACAATGCATCTTAGGTACCATTCCGGCGAGAGGCCGTATCAGTGCGTGGATTGCGGCAGGGGATTCGTTTCCGGCAGTTTCCTCAAGAAGCATCGAAAGATTCACGAGAGAACCGCGCACCTCGAGGCTCGCGACTGCGACCACTGGAGCAACGTTCGCGACGAGCTTGCCAGCTGCGAAGATTTCACAATCAAACACGAGGACATTCTTCTCGATCCTGGACAAAAATTCGAGGGGAACGAGAAGGTCTGCGACCTTTGCCAAGAGAAGTTTCACTTCGTGACCAGATTAGTGGCACATCTGAGGATCGTTCACGGTATCCACAGACCTTTCAAGTGTGTCACGTGCGGCAAGACGTATCCGCAGCAGTTCATGCTAAATGCCCACGTGAAAAAGTCGCACACACCGAAAACGACGCCCTGCGGCCAATGCAGTTTCATGGGTGTGAACGCCACCGACGTGGAGAGACACGCGAAACGACACCATCGAGAAGTGAAGCTCACGTGCGAGATCTGCAGCGAGAACTTCGTGGACAAGGATTCCTTGATGACTCACACGACTATGCACAACTTTATGCAGTTTCATCAGTGCAACGCTTGCGGCACTACGTTCGACGACGTGTACAGCCTGAAGGAGCACAACCGTTTGTACCACTACGATCCGACGACGTTGATCCAGGAGAAGCTGGAGGCGGACGCGCCGCGGCAGGACACAAATGCGACGGAGCACAAATGCGACGTCTGTGGCAAGGTTTACAAGTACAAGTCCGTGCTGAAGCAACACAAAGTGAAAGCCCACGGCGACCTGCCGAACTACGAGAGGCGTCGGTATCTGTGCGCTCTCTGCGGCAAGGAGCTGAAAACCGCGAAAGGCCTGGAAATTCACAATCGGTCGCACACCGGTGAAAAACCGTACACCTGCGAGGTGTGCGGCAAGTGTTTCGCCTGCGAGACGCTGCTCAGGACTCACAACGTCACTCACACGGGCGAGAGGAAGTACTCGTGCGACCAATGCGGCAAAGCTTTCACGCAGAGGTCCACGCTGGTTGTTCACAAGCGTTATCACACTGGCGAACGACCGTACGTTTGCCCCCGGTGTGGAAAAGGCTTCGTCACCAGGACTGTTCTGAACACTCATATGAAATCCTGTCGTTAA
Protein Sequence: MTSRAIHECVKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRSNQKSNLESHRRRHTKDYSFRCERCGKGFVLRTEYLEHVNTHTRKQLYRCDHCNKCYPYKKNLTNHLRTQHAGVLPLEVKNDERRYRHVCTICLEAFARKSFLESHLKQRHGLSNERTTRHLCDLCGAVLSSKRRLMVHRRGHADEKIVKCDLCDKQFASRENLNVHRRVHTGEKPYGCSQCGRRFTQRTSLTMHLRYHSGERPYQCVDCGRGFVSGSFLKKHRKIHERTAHLEARDCDHWSNVRDELASCEDFTIKHEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTTPCGQCSFMGVNATDVERHAKRHHREVKLTCEICSENFVDKDSLMTHTTMHNFMQFHQCNACGTTFDDVYSLKEHNRLYHYDPTTLIQEKLEADAPRQDTNATEHKCDVCGKVYKYKSVLKQHKVKAHGDLPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_01418474;
80% Identity: iTF_01418474;