Thoc028499.1
Basic Information
- Insect
- Tetragonula hockingsi
- Gene Symbol
- -
- Assembly
- GCA_010645185.1
- Location
- WIUV01001049.1:15132-16794[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-13 9.2e-10 39.1 0.1 3 38 37 71 35 78 0.90 2 2 2.6 1.1e+04 -2.7 0.0 30 38 111 119 111 123 0.84
Sequence Information
- Coding Sequence
- atgtttgtttctcttttctcgattCCTACCTTCGTACAGGCACGACGAAGGTGTTACACCAGAAGATCCAGTTCCTCTGGAAAGTTCGTGAGATctgatattgatattgaacGTATCCAGTCAGCTATCGAAGCAGTGGCCAGCGGGTTGTCCTTGAGGAAAGCAGCTGAAAAGTTCTCTATATCCAAGTCTGTTCTTCATCGTTACAGTAAAATGGGAATTCTGGGTGTAATGGAGAAATATATGCGAAATGagTCGCGTACGCTGGCCTACCTTAACTGCCAGAAAGTCACCTATCCGTGCAAGAACTGCGGCAAGGTGTACCATTACTACTCCAGCCTGGCAAGACATTTGAAGCATGAGTGTGGCGTGGAACCAAAGTTCCACTGTCCGCTGTGCCCTTACAGAACGAAGCACAAATCCAGCTTGAACACACACTTGAACGGCAGGCATATGAAACTTTTGAGCGAATTCTACACGACGCCAAATGGGAATAAGTTATCGTCATCTATGAACGCTGGAAATTAA
- Protein Sequence
- MFVSLFSIPTFVQARRRCYTRRSSSSGKFVRSDIDIERIQSAIEAVASGLSLRKAAEKFSISKSVLHRYSKMGILGVMEKYMRNESRTLAYLNCQKVTYPCKNCGKVYHYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYTTPNGNKLSSSMNAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420579;
- 90% Identity
- iTF_01420579;
- 80% Identity
- iTF_01419297;