Thoc022232.1
Basic Information
- Insect
- Tetragonula hockingsi
- Gene Symbol
- -
- Assembly
- GCA_010645185.1
- Location
- WIUV01019233.1:1885-4158[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-13 2e-09 38.1 0.0 1 39 246 285 246 289 0.90 2 4 1.4e-12 6.1e-09 36.5 0.1 2 39 301 338 300 341 0.94 3 4 5.2e-19 2.2e-15 57.1 0.0 2 45 356 400 355 400 0.97 4 4 6e-19 2.5e-15 56.9 0.1 1 42 407 449 407 450 0.97
Sequence Information
- Coding Sequence
- ATGTTTTGTCATACAGGTCTCGGTCATTACGGTCATCATCCGGATCCCGGCGAGGTTGATCTACCTCCAGAAACTCAACCCACACCGCCGAGTGCCACATTGGTTGGTACTACAATTACGCATTTAAGGGACCCGGATCATCATTCCACAGTTGCGATTAGATTTACGTTGCTCGGTTCGCAACCACCCACGCAAGCTCGTTTAGTCAAAGCGCCCAACTTTGCCCATCGTTGGCGTTCCTTTCTCCGATATAACGTTCATGGCGATAGCAACGACGATGTTGATATTGATACTGACGTCGCCGAAAGCATAAAATCCGGGcgagcgaaattaaaaaaagaaaaaaaagagaacgctAATGTGACTAATTATTCGGATGTGATTATACTGTTATTATTCAATGCTATGCAACTCTTTCAGCCAGACGACACGTTAGAACTGTGTTATTTTTCGCATTTGTTCGCAGAGATTCAGAATTGTGACAGTGTAAAGATAAAGTTTGAAACGTTGCACACAATGGACTCGTCGGACACGATTGATATCGATAGCCACATGTCGGATCGTGCGAGCGTTAGTTCAAAGAACGCAGCCGATAGCGACAACATGATGATGATCACACCGGAATTGCTTGGATTGATGCCTTCTGGAAGCTCGATACACTCGGATTCTGGCGAGACTAACTCGAGGGGCCATTCCGGCCAATCCAGCTCTCATCATCACGGTTCAAAATCATGGACTCAAGAGGACATGGACGCTGCTTTGGAAGCCTTACGGAATCACGATATGAGCCTTACAAAAGCCTCTGCAACGTTCGGCATACCATCGACGACTTTGTGGCAACGAGCGCATCGGTTGGGAATCGACACTCCGAAAAAAGACGGACCTACGAAATCGTGGAGCGACGAGAGTTTAAACAACGCGCTCGAAGCACTACGGACCGGCACGATATCAGCGAACAAAGCTTCAAAAGCATTTGGAATACCGTCGAGTACCTTGTATAAAATCGCGAGAAGGGAAGGCATCAGGCTGGCTGCGCCTTTCAATGCAAGCCCAACCACCTGGTCGCCTGCCGATCTCGATCGTGCCCTCGAAGCGATACGTTCCGGCCAAACGTCTGTGCAGAGGGCGTCGACAGAATTCGGCATACCAACAGGAACGTTGTACGGCCGATGCAAAAGAGAGGGCATCGAACTTAGCAGGAGTAATCCTACACCTTGGAGCGAAGATGCTATGACCGAGGCCCTCGAGGCTGTCAGATTAGGCCATATGAGCATTAATCAGGCGGCAATCCACTATAATTTGCCGTACTCGTCCTTGTACGGTCGTTTCAAGAGGGGAAAATACGAAGAACCAGCGGTGGGCGAGATATCGCAAGACGGTAGCAGTCCTCATTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTATACCCGATCAAATGTCGTACCAAGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTVAIRFTLLGSQPPTQARLVKAPNFAHRWRSFLRYNVHGDSNDDVDIDTDVAESIKSGRAKLKKEKKENANVTNYSDVIILLLFNAMQLFQPDDTLELCYFSHLFAEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGETNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -