Tdav017710.1
Basic Information
- Insect
- Tetragonula davenporti
- Gene Symbol
- r
- Assembly
- GCA_010645165.1
- Location
- WIUW01000034.1:59288-67858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.018 1.9 9.3 0.3 3 21 851 869 849 873 0.89 2 7 0.00098 0.11 13.3 0.1 2 23 888 910 887 910 0.96 3 7 0.18 19 6.2 0.6 1 23 940 964 940 964 0.92 4 7 0.014 1.6 9.6 1.6 1 21 1011 1031 1011 1036 0.95 5 7 4.3e-05 0.0048 17.5 0.3 1 23 1098 1119 1098 1119 0.98 6 7 0.00057 0.063 14.0 0.1 1 21 1125 1145 1125 1146 0.95 7 7 6.6 7.3e+02 1.2 1.0 1 13 1169 1181 1169 1181 0.88
Sequence Information
- Coding Sequence
- ATGCACGAGCGTGCGGCCGTCCTTGATCGTACAACCAAAACCGTTTATCTTTTGCTCGAAGATGGTTCTGTCTTCCCGGGGAGACATTTCGGCGCGGAGAAACCGGTCGATGGTGAAATTGTGTTCCAGACCGGTATGGTGGGTTACCCAGAGTCGCTCACAGACCCTTCTTACCATGCTCAAATTTTAGTATTGACATATCcgataattggaaattatggAATATTCAGCGATGAGGTGGACGAGCATAAAATACCATATTGGTTCGAATCGCGTCGAATTTGGACGGCTGCTCTGGTGGTCGGTGAAATTTGCGAAACCCCGAGCCACTGGCGGCAATCGAAAACGCTGTCCAGCTGgatgaagaaacaaaacatTCCAGGCATATACGAGATCGATACCAGAGCTCTGACGAAAATCATTCGCGAGAAAGGCACGATATTAGGCAGGATCGTGTACGATCCACCGATTTCTAATCGCGTTCCGTCGTTGATCCCTCCGATAGCCGATCCGAACAAGAGAAACCTGGTCGCGGAAGTGGTTCAGCCTATACAAAGGACGTACAATTCCGCTGGTTATCCCCGCATATGCGTAATAGATTGCGGTCTAAAGTACAATCAATTGAGGTGCTTGATTAGTCGAGGTGCTCGCGTGGACGTCGTGCCTTGGAATTACGATTTAAGCAAAGCCACTTACGATGGCCTGTTCCTCAGCAATGGACCGGGCGATCCGAGCATGTGCGAAACCACGGTGGAAAGTATTCGATCCATTCTGAAATCGGAAACGCAGAGGCCGATTTTCGGTATCTGTTTGGGACATCAGTTGCTCTGCATCGCCGCTGGTTGCATCACATACAAGATGAAATACGGAAACCGTGGTCACAATCAACCGGTCACGCATCACGGAACCGGTCGTTGTTACATGACCTCGCAGAACCATGGATTCGCGGTCGATGCGAAACAATTACCAACTGATTGGGAACCGCTCTTCACGAATACCAACGACAACAGCAACGAAGGTGTCGTGCATTCGACACTTCCTTATTTTTCGGTTCAATTTCACCCGGAACACACCGCTGGCCCTCAAGATCTTGAATGCTTGTTCGATGTATTCCTAGAAGTGGTGGTCGACACAGCAAACGGAGGAAAATCAGTCTCCGTGAAGGAAACACTGAACAGAAAATTGAGCTTCAACGTGGAGCATATAATGGATTTATCTGTACGGCCGAAGAAAGTGTTGATTTTGGGATCCGGTGGTCTCAGTATCGGTCAGGCGGGTGAATTCGACTATTCTGGATCGCAAGCGATCAAGGCGTTGCGTGAAGAATGCGTGCAAACGTTGCTGATCAATCCAAATATTGCGACTGTGCAAACATCGAAAGGCATGGCCGATAAGGTCTACTTTCTGCCGATTATTCCGGAATATGTGGAACAGgtAATACAATCAGAGCGACCCGATGGTGTTCTCTTAACATTCGGTGGGCAGACTGCTCTCAATTGTGGCGTCGAGCTCGAAAAGAACGGTATATTCAAGAAATACAATATCAAAATTCTTGGAACTCCTATACAATCAATTATAGAGACAGAAGATAGAAAGATCTTTGCTGAACGCATCGCAGAGATCAATGAAAAAGTGGCACCAAGTGCAGCGGTCTACTCTATTCAAGAGGCATTAGACGCAGCCGAGAGATTAGGCTACCCAGTGATGGCCAGAGCAGCATTTTCTCTGGGAGGATTGGGCTCTGGTTTCGCGAACTCCATGGAAGAGCTACGAAACCTCGCTCAGCAAGCGTTCGCTCATTCGAACCAATTAATTATCGACAAGTCGTTGAAAGGCTGGAAAGAAGTGGAATACGAAGTCGTTCGCGATGCCTACGACAATTGTATCGCCGTTTGCAACATGGAGAACGTGGATCCTCTTGGTATTCATACAGGAGAGTCGATCGTCGTCGCACCGAGTCAAACGCTGTCCAACAAGGAATATAATATGCTTCGTACCACTGCTATTAACGTGATTAGACACTTTGGCATTGTTGGCGAATGCAACATTCAATACGCGCTCAACCCAAACACCGAGGAGTATTATATAATCGAAGTGAACGCGAGATTATCTCGTAGCTCCGCATTAGCGAGTAAAGCGACCGGCTATCCGCTGGCCTACGTGGCCGCCAAATTGGCTCTTGGTATTCCTTTGCCGCATATTCATAATTCCGTTACGGGAAAAACCACGGCTTGCTTCGAGCCCAGTCTCGATTATTGCGTGGTTAAGATACCGAGATGGGATTTGAGCAAATTTCATCTTGTCAGCACAAaggtatgtgtgtgtgtgtgtatatatatatatataaaacgtagCTCCCTTTATCATAACGTTCTGACGTTGATTTACAGGCGCGTGATCGGCGGCAGCTACAGATGCACACCGTGCGACTTTTGGTGCGAGGACGACGAGACGATGGACTCGCACATGCTCGAGCGGAGCCACCGCGACGTCGTCTCGATGATGAATGGCTCGGTGCCGATCATGATCGGCCGTCAGCGGGCCCTGGCCTGCGGCAGCTGCGATCGCCGATTCCGCTACAATTTGCAACTTCGGCTGCACGTCAAGGAGACCGGCCACGAGGTGGGCCCGACCGCCACCGACGAGTATCAACAGCGAATCAAATGCAACCTATGCCCGCAAGTCGTTCGATCGTTGGTGGCACTTCAGCGTCACCAATTGTCCGCCCATGTCGCGAGAGGGACGATCGCGAAGAAAGACGAGGCGGCGAGCGAGACGAACGCGGGGCGACAGACTTCGCGATCAGCCCCGGCGCCCTATTTCTGCTCGTTCTGCTCGATGAACTTCGCCACCGCCCAGGACGCTGTTCTCCACCGGAGGACGTCCAGTCACAAAGAAATGGTCAAAGCTCGGAAAAGCAACGACAGCTCGGCGACGTCGATGACGCGCGAGTGCCCTCACTGCAGGCAGAAGCAGGCGAATCTGTCGGAGCACAAGGAACATCTTCTCGACGAGCATCCCGAGCTTTGCTACAGATGCCCGAAATGCGGGATGTTATTCGCCCTCTCGCAAGACGTGACGAGACACACGAGAGAGAACAAATGCCACGGCACAGCCGTTGGCGAATTAACGAAAACGAGAACGTCGAACCGGAAAGACGAATGGAGATGCGGCAGCTGTAGCTTCTCGAGCAACTCTCAGGCGGAGTTTATCTTTCACGAGGCTCTTCACGCGGGGGCCGTGCGGAACGACAACGAGGAGGACGGGAACCCTGGCAAATCGCTGGCCAAGTATTCCTGCCCCATTTGCAAGAAGGCGTTCGCGAAAGTGTCATTACGGAATCACATCAGGAGTCATACCGGGGAACGACCGTTCCCCTGTGCCAAGTGTCTCGTGGCCTTCTCCAGACGATCGGACCTAAACGCCCATCAGAAAGAGTGCACCGGCTCggcgtcatcgtcgtcgtcagGCTGGACGACGAACGAATCTGGGAGGAAACGGTGCTTCTCTTGCTCCGAGTGCAACAGCGCTTTCTACACGAAGTGA
- Protein Sequence
- MHERAAVLDRTTKTVYLLLEDGSVFPGRHFGAEKPVDGEIVFQTGMVGYPESLTDPSYHAQILVLTYPIIGNYGIFSDEVDEHKIPYWFESRRIWTAALVVGEICETPSHWRQSKTLSSWMKKQNIPGIYEIDTRALTKIIREKGTILGRIVYDPPISNRVPSLIPPIADPNKRNLVAEVVQPIQRTYNSAGYPRICVIDCGLKYNQLRCLISRGARVDVVPWNYDLSKATYDGLFLSNGPGDPSMCETTVESIRSILKSETQRPIFGICLGHQLLCIAAGCITYKMKYGNRGHNQPVTHHGTGRCYMTSQNHGFAVDAKQLPTDWEPLFTNTNDNSNEGVVHSTLPYFSVQFHPEHTAGPQDLECLFDVFLEVVVDTANGGKSVSVKETLNRKLSFNVEHIMDLSVRPKKVLILGSGGLSIGQAGEFDYSGSQAIKALREECVQTLLINPNIATVQTSKGMADKVYFLPIIPEYVEQVIQSERPDGVLLTFGGQTALNCGVELEKNGIFKKYNIKILGTPIQSIIETEDRKIFAERIAEINEKVAPSAAVYSIQEALDAAERLGYPVMARAAFSLGGLGSGFANSMEELRNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRDAYDNCIAVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNMLRTTAINVIRHFGIVGECNIQYALNPNTEEYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPHIHNSVTGKTTACFEPSLDYCVVKIPRWDLSKFHLVSTKVCVCVCIYIYIKRSSLYHNVLTLIYRRVIGGSYRCTPCDFWCEDDETMDSHMLERSHRDVVSMMNGSVPIMIGRQRALACGSCDRRFRYNLQLRLHVKETGHEVGPTATDEYQQRIKCNLCPQVVRSLVALQRHQLSAHVARGTIAKKDEAASETNAGRQTSRSAPAPYFCSFCSMNFATAQDAVLHRRTSSHKEMVKARKSNDSSATSMTRECPHCRQKQANLSEHKEHLLDEHPELCYRCPKCGMLFALSQDVTRHTRENKCHGTAVGELTKTRTSNRKDEWRCGSCSFSSNSQAEFIFHEALHAGAVRNDNEEDGNPGKSLAKYSCPICKKAFAKVSLRNHIRSHTGERPFPCAKCLVAFSRRSDLNAHQKECTGSASSSSSGWTTNESGRKRCFSCSECNSAFYTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -