Tdav012316.1
Basic Information
- Insect
- Tetragonula davenporti
- Gene Symbol
- -
- Assembly
- GCA_010645165.1
- Location
- WIUW01003944.1:5386-8223[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.081 9 7.2 6.9 1 20 20 39 20 41 0.93 2 11 0.0075 0.83 10.5 0.3 2 23 92 114 92 114 0.94 3 11 0.00051 0.056 14.2 0.2 2 23 157 179 156 179 0.96 4 11 5.3e-07 5.8e-05 23.6 2.9 1 23 247 269 247 269 0.99 5 11 0.00016 0.017 15.8 1.7 1 23 297 319 297 319 0.99 6 11 0.00017 0.019 15.7 2.3 1 23 325 348 325 348 0.94 7 11 8.2e-05 0.009 16.7 0.0 1 23 354 376 354 376 0.98 8 11 0.00035 0.038 14.7 1.2 1 23 382 404 382 404 0.97 9 11 0.00092 0.1 13.3 8.7 1 23 410 432 410 432 0.97 10 11 9.4e-06 0.001 19.6 0.1 1 23 438 460 438 460 0.96 11 11 0.0082 0.9 10.4 3.0 5 23 469 487 467 488 0.93
Sequence Information
- Coding Sequence
- ATGGTGGAAGCGATGCTACCTCcgttaaatgaaattgccGCCTCGTTGAAAGATCAATACGCGTGCAAACACTGTTGTCGAATCTTCGACAGGAAACACCACTTGACGCAACACGTGTCCAAGTGTAAAAGCACGACTGAAAACGACTGCACTGAACGCCGCAGCGTACCAAACGATACAGAGGATACAGAGGATAGAGATAAAACCGAGGAAAATCCAGGGGATTCGAAATTGTTTCAGAAACGTAAGAAAAACAGAAGGCTTGGTACGCGTACGTGCACGTACTGCGATTACACGGCCAGTGAAAAGAAACTGCTGGAGTTACATCTGTTGGAATCGCACGCGGAGTTGGAATCGCACGCcggaaagaaggagagaaaactGAAGTGGAAGGTCGAGTCTGACACTATCGTGCAAATATCGACGGTCGATAGCGAAAGTGCAAACGTCGAGGAGGTAGAGTACGTCCAATGTACCCAATGCGACGTTGTCTTCGTGAATATGAAATACTTCATAGATCACATGAACAACGAGCACGACGCGCAGATGCACTATTGCTGGTATTGCAAGCTGGTGTATCATGGCCGAGATAAGGATTTCGAAGACCACGTATCGATGCACCATAGTAATTACAAAGTGAGAGACACCAGCGGGGACGAATGTTTGGAACGCGCGAACCAAGTGAGAAAAGAGGACGAGAGAAGATCGTCCGATCGGCAGATCGAGAAGCCTGTTTGTTACACTTGCAACTTGTGCGAGAGAAACTTCACAAAGAAGTCCGAATTGAAGAAGCATATAAACAAACACTCCGACGTCAATCCGATCGAGAATCCAGACGAGACGGAACTTGTGAACAAGGCGAGGCAAATAATCAACGACCGTGTCTCCTACAAGTGCGACACGTGTAAAAAGGTTATATTCACGAAACGTGGCTTTCTACGCCATATTCGCGTGCATTCGGACAAACGGCCGTGCAAGTGCCACCTATGCGGGAAATCGTATCGCATCGAGCAAGACTTAGCCAGACACGTACGAGACGTTCACGAAGGATTGAAAAAATACCCCTGCGACATCTGCGGCCGGGCATTTGCCAACAAAGGAGCAAAAGACGATCATCGGAGAATTCACACCGGCGAACGTCCGTACGCGTGCGAACACTGTCcaaaaatgtttcgaacgCTGAATTCTATTTACATTCACAATCGCGTGCATACGGATTATAAGCCTCACGAATGTACGTATTGCGGCAAGCATTTCAGAAGCAGGCAGCGGCTGACTCATCATGAAACTACGCATACAGGTATCAAAGCATTTGCCTGTGAAATCTGTGGTAAAACGTTCTCCGTCAAAGGGGAAGTCGTGCGACACCGTACGATACACAACGAGGAGAAGCCTTTCGATTGTAAATGTGGAATGAAATTCGGTCAAAGGAGATACCTGAGGAATCATATAAAACAACATCATAAGGAAGCATCTTCGTGGTTATTAGCAGAATTATTGGGAAGTAGCAACTGA
- Protein Sequence
- MVEAMLPPLNEIAASLKDQYACKHCCRIFDRKHHLTQHVSKCKSTTENDCTERRSVPNDTEDTEDRDKTEENPGDSKLFQKRKKNRRLGTRTCTYCDYTASEKKLLELHLLESHAELESHAGKKERKLKWKVESDTIVQISTVDSESANVEEVEYVQCTQCDVVFVNMKYFIDHMNNEHDAQMHYCWYCKLVYHGRDKDFEDHVSMHHSNYKVRDTSGDECLERANQVRKEDERRSSDRQIEKPVCYTCNLCERNFTKKSELKKHINKHSDVNPIENPDETELVNKARQIINDRVSYKCDTCKKVIFTKRGFLRHIRVHSDKRPCKCHLCGKSYRIEQDLARHVRDVHEGLKKYPCDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHECTYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRTIHNEEKPFDCKCGMKFGQRRYLRNHIKQHHKEASSWLLAELLGSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -