Basic Information

Insect: Tetragonula davenporti
Gene Symbol: Clamp
Assembly: GCA_010645165.1
Location: WIUW01012864.1:3017-6105[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1e-05 0.0011 19.5 2.4 1 23 103 125 103 125 0.98

2 8 0.0002 0.022 15.4 0.4 1 23 157 180 157 180 0.93

3 8 5.7e-05 0.0063 17.1 2.6 1 23 280 302 280 302 0.97

4 8 7.8e-06 0.00085 19.9 0.1 1 23 308 330 308 330 0.98

5 8 1.4e-06 0.00015 22.2 1.7 1 23 336 358 336 358 0.98

6 8 2.9e-07 3.2e-05 24.3 1.9 1 23 364 386 364 386 0.99

7 8 3e-06 0.00033 21.2 1.0 1 23 392 414 392 414 0.98

8 8 2.9e-05 0.0032 18.1 0.6 1 23 420 442 420 442 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1e-05	0.0011	19.5	2.4	1	23	103	125	103	125	0.98
2	8	0.0002	0.022	15.4	0.4	1	23	157	180	157	180	0.93
3	8	5.7e-05	0.0063	17.1	2.6	1	23	280	302	280	302	0.97
4	8	7.8e-06	0.00085	19.9	0.1	1	23	308	330	308	330	0.98
5	8	1.4e-06	0.00015	22.2	1.7	1	23	336	358	336	358	0.98
6	8	2.9e-07	3.2e-05	24.3	1.9	1	23	364	386	364	386	0.99
7	8	3e-06	0.00033	21.2	1.0	1	23	392	414	392	414	0.98
8	8	2.9e-05	0.0032	18.1	0.6	1	23	420	442	420	442	0.97

Sequence Information

Coding Sequence: ATGTTTGACCCACAACAAATACAGCAGCAGCAAGCTGCTCAAGGTCAACAATCGCAGCAACAGCAGTCTCAACAGATGTATGTTACAACAGATAAGAAAGAGGATAAGTCGCAGCAGCAGTCAGCGACTGCTGACTTCCCTTTCTACTACAATGTCAACATGCTCCAAAAGGTTCAAACAAACGCGGTGAGCACGATTGGTGCAATCACAACCGACGACAAGGGTTGTTATCGTTTTGATGTACAACCTGTCGGTTATAACACATTATTGAACCAGATGAGTATCGCGGCTGCTACCAATGCGACCTTCAAATGTGACATTTGTGGGTTGGTCTTTGGGCATATGAGTTTGCTGAATCATCACAAACGGATTCATAATACAACACCTAGTAATCTTCAGCAACAACCGCAGCAAGTCGTCGTGCAAACACCGACAACGGTTACTGTTGCAACTACGCCAGAAAGACCATATACCTGTGATGTGTGTGGAGCTTGTTTTGCACTACCAGGAGAATTAAAAAGCCATAAAACAAATATGCACCAGAAACCAAAAGTGCAAATTTGTGAAGATTGTGGCAGTGAAGACCCTTGTGAACATCATcctactaaaattaaaaaaaCTATCAAACCTGGTCATCATCCTGTGAAACGAAGGGGTGTCACTAGTGTCACTAAGTGCCACAAGTGTAACGGGAcaggaataatttttattgGTAAACACGACGAAAAACTAGATTCTGGAATCAGTTCCCTCGCAAAGTGTGGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAGCGGTAAACAGAACAGTCAAAATCAGGCAGAGAAGCCGTTTCATTGCAACGTATGTGATGGAACATTCTCCAGATATTCGTCACTTTGGTCCCATAAGAGACTTCATTCTGGAGACAAACCTTTCAAGTGTGAAGTTTGTGGCTTAGCTTTTGCAAAAGCTGCTTATCTGAAAAATCATGGACGAGTGCATACTGGCGAAAAACCATTTAAATGTAGTGTTTGTGGTATGCAGTTCTCACAAAGTCCTCATTTAAAGAATCACGAAAGAATTCATTCTGGCGAACGTCCTTATCAGTGTGAAGTATGCGAAAAAACATTCGCTAGACATTCAACCCTTTGGAATCATAGAAGAATTCATACCGGTGAAAAACCTTATAGATGTAATATATGCGGTTCGGCCTTTAATCAAGCTACACATCTGAAAAATCATGCAAAAGTTCATACCGGTGAAAAACCACATAGATGTGATATATGCGAGATCGGATTTTCCGATCGCTTTGCATTAAAGCGTCATCGTGCAATCCATGAAAAATACGGTCAAACTGCCCGAAATCAGAATGCAAATAATCCAAGTAACGCACAGCAAGCGAACGCGAGTAatcagcagcaacaacagcagcagcagcagcaacagcctCAGCAAGCACAGCAAGGTCAACAGGTTGTTGTAGTGAATGCCACGACTCCTGTTACTGTAAGTCAAGGTCAAGGGCAAGCAGTAATGCTTGAAGAAGTCTACAAGTGCCAGGTGACCTTCCCTGAGCCTAAATGA
Protein Sequence: MFDPQQIQQQQAAQGQQSQQQQSQQMYVTTDKKEDKSQQQSATADFPFYYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSIAAATNATFKCDICGLVFGHMSLLNHHKRIHNTTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKLDSGISSLAKCGGCKATGRIIIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNANNPSNAQQANASNQQQQQQQQQQQPQQAQQGQQVVVVNATTPVTVSQGQGQAVMLEEVYKCQVTFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_01169356;
80% Identity: iTF_01420449; iTF_00982466; iTF_00983140; iTF_01421093; iTF_01419160; iTF_01417886; iTF_00218608; iTF_00215899; iTF_00217919;