Tdav007163.1
Basic Information
- Insect
- Tetragonula davenporti
- Gene Symbol
- -
- Assembly
- GCA_010645165.1
- Location
- WIUW01002636.1:16881-19643[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.17 12.6 0.0 2 20 147 165 146 166 0.94 2 13 0.34 37 5.3 4.3 1 23 174 197 174 197 0.93 3 13 2.8e-06 0.00031 21.3 0.9 1 23 203 225 203 225 0.98 4 13 4.6e-05 0.0051 17.4 1.9 1 23 372 394 372 394 0.97 5 13 0.0029 0.32 11.8 0.3 2 21 404 423 403 424 0.93 6 13 0.00026 0.029 15.1 2.6 1 20 446 465 446 468 0.92 7 13 0.012 1.4 9.8 0.7 1 23 473 496 473 496 0.95 8 13 1.1e-06 0.00012 22.5 0.3 1 23 502 524 502 524 0.98 9 13 0.0018 0.2 12.4 6.3 1 23 531 553 531 553 0.98 10 13 0.00031 0.034 14.8 0.4 3 23 561 581 559 581 0.97 11 13 0.00036 0.039 14.6 0.2 1 23 587 610 587 610 0.96 12 13 0.18 20 6.2 0.1 1 23 624 646 624 646 0.94 13 13 0.0011 0.12 13.1 0.0 2 23 898 919 897 919 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCACGAGAATGAGCAATATGTTACATTTCCTCTCTCAGGAGTACACGATGGTATACAAGATAATATCATATCTCATGAAGAGATATGTGAACCTGTTGACGAATGCGTTTTACAAGAAGGACTCACCGAGGTATCTGTTACTGATGTTAATTCTAGTATTACAGAAGCACAAGTTGCAGTTGAGATTTTAGCTGAACATTCCGACGAGGAAGATGAAAATCGTGTAGTATatcctatatatattaaacaagaaGAACAACAGCAATATACATCTGGAGATGACGAATCGATGGCTGTGGAAGCCCTCCGACAACTTGGGGGCATGTATCCTTGTTTTGAAGATAAAAAAGTATCTTGTCCACATTGTGCAAACCTTTTCACGCAAACTGAGATTACAAAGCATCATACTACCTGTTCTGCTAATAAATTATCATGTGTTACTTGTGgagaaagatttgaaagaaagatagatTTAAACAACCACATAGTTTGTCATCAAGTAGATCGTCCACATGCTTGCAGAACTTGTGGCAActtatttcgttcaaaaaataatttgaggTGCCATATGTTGCAAGTACATCAAGTAGAACGACCTCACAAGTGCACCATATGTGGAGCAGATTTTCAGAGGCCTTCTAGTTTATCCAAtcatatgaaaattcatacaTATGTCGCAGGACGTGCCATTATGCAGTCACAGGGTAATAATGTATCACAATCAGAAACATTCAGAAAATGGCCTGAAAATATGACAGAATCTCAAAACAATCAAGTGCCATCTTCATCAGTGCAAAGTTATGAGACTGTTCAATGGACAGTACCATCTTATAACTTTCAAAGTGAACAGACAGCAGTTAATACAATATCCAACCctgaagaaaaaatagataCTTTACATGACTTTACTGTAATGCCAAATGGAGAAGTGACACAATTTGAATATAcgcaacaaaataatataaatactcaAGTCAATCAACAATACAATCTTTCATTAAACTCATTTAATAATGCTGATACAATGGTGAAAGTTGAAACTTTACCATATAATAATGAAGatagaaagaattatataGAAGTTGAAACAAATGATACAAAACAGCATACTTGCAGACATTGTGGAATTAGTTTTTCTCGTGCAACAGCACTAGTGTCCCATGAAAAAATTCATGCATCTAAGAATTGGAACATGCCAATCGAATGTGAATATTGTGATAAACAATTTCAAGATGGCAATCATTTAGCAACACATCAAACAACTTGTGCAAAGAGACTGATGCAAAGTAATGTGGAACAAGgtatatctaataataagtGGGGTAAACATGCATGTTCTGAATGtggtaaaaaatttacaaccaAACAAAAAATGTTTAGACATCAGTGGATTCATAGAAAGAAAACACATTCTTGTGAAGTATGTGGATCccaatttgaaaaacaaaatcaatTGGATGAACATAGATTATCAGCACATCCTGGTGACTCTCCATTTACTTGTACAGAATGTGGTAAAAGTTTTGTATCACGTCAAGGGCTCTGGGAACATGGTAGAACACACGCTGGGAGTCCTGCGCATTTTCATTGCGATACATGTTCCAAAACATTTTCATCAAGACAAGGATATTTAATACACCATAGGACTCATACCGGGGAAAGACCATATGGTTGCAAGTTTTGTTGGAAAGCATTTAGAGATGGTGGGACATTAAGAAAACATGAACGTATTCACACAGGAGAAAGACCTCATGTTTGTCCTTTATGTTCAAGAGCATTTAATCAAAAAGTTGTTTTAAGAGAACATGTTCGATGGGTTCATGCGGcaggaaaaaacgaaactgaAGTAACTGGGCCTCCTTTCTCATGTCCTATATGTGGTGCTTTAAATCAAGATCGGGATGAATTATGTGCACATATTGTTAAACATTCAGACCAAATGATTGCAGAAGCAAAAGCTAAAACAAACAATAATGCTCCAAAAACCAAGTCAGttaagaaaaaatcaaaagcTTCTACAAGTACAAGTTTACAAGAAAAACAAGGCACTGGAAAtcgtataatttctaaatcagAGGAAAATGAAGCACTTTTATCTATTACAGAAACAGATAAATCAGATGACCAACAAATTTTAAgtgataaacaaaataatacttttcttGTTGTTACTACAGAAAAacgtaatgaaaattatatttcaatatctgaACTTAAAACTGAGGatgtacaattatttgatGAGAAACATGAAGATGAAGATATGCATATTTCACAAACTAATCATAACCATAGAGAATCTTTAAATACAAGTCATATAGTTTCTACAGAGCAAGAAAGAAGTGCACTTCACACAAGCAGTCATAATGAAATAACTACAATGCATTTAATACAAACTTCAAAGCAAGCAAAtactttacatttaatatcaaaacaaaatgaaacattacCCGTTCTAACATTACCAAATTCTCGAAGCCATGAAAATTTTCCCAGTCAAATTGCACAAATAAGTAATAATGATTTACCTATGAATATGGTAACTCACCATTCAACTAGACAAAgtcaaaatatcaaaaatgaaGTTGTAGAAGAATCGTTAATACAAGAAGGAGGATCGCAAACGGCTGTAATACAGGTTGTACAATATCATCAACAAGACAGTGATGATGGAGAGGAATTAGTTTGTGGTATTTGTGGAGAAGATTTTAATgacaaaaatgtattaatgGAACATGTTAAAATTcacatataa
- Protein Sequence
- MEAHENEQYVTFPLSGVHDGIQDNIISHEEICEPVDECVLQEGLTEVSVTDVNSSITEAQVAVEILAEHSDEEDENRVVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCPHCANLFTQTEITKHHTTCSANKLSCVTCGERFERKIDLNNHIVCHQVDRPHACRTCGNLFRSKNNLRCHMLQVHQVERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSQGNNVSQSETFRKWPENMTESQNNQVPSSSVQSYETVQWTVPSYNFQSEQTAVNTISNPEEKIDTLHDFTVMPNGEVTQFEYTQQNNINTQVNQQYNLSLNSFNNADTMVKVETLPYNNEDRKNYIEVETNDTKQHTCRHCGISFSRATALVSHEKIHASKNWNMPIECEYCDKQFQDGNHLATHQTTCAKRLMQSNVEQGISNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFSCPICGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKTKSVKKKSKASTSTSLQEKQGTGNRIISKSEENEALLSITETDKSDDQQILSDKQNNTFLVVTTEKRNENYISISELKTEDVQLFDEKHEDEDMHISQTNHNHRESLNTSHIVSTEQERSALHTSSHNEITTMHLIQTSKQANTLHLISKQNETLPVLTLPNSRSHENFPSQIAQISNNDLPMNMVTHHSTRQSQNIKNEVVEESLIQEGGSQTAVIQVVQYHQQDSDDGEELVCGICGEDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141985;
- 90% Identity
- iTF_00217900;
- 80% Identity
- iTF_01420428;