Basic Information

Insect: Tetragonula davenporti
Gene Symbol: -
Assembly: GCA_010645165.1
Location: WIUW01001482.1:22720-25453[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.017 1.8 9.4 0.2 6 21 12 27 6 28 0.86

2 14 1.4 1.6e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.39 43 5.1 0.7 1 18 234 248 234 254 0.73

4 14 0.011 1.2 10.0 3.1 1 23 364 386 364 386 0.97

5 14 0.00018 0.02 15.6 0.2 2 23 390 411 390 411 0.97

6 14 0.00091 0.1 13.4 4.9 1 23 422 444 422 444 0.97

7 14 0.028 3.1 8.7 0.1 1 23 463 484 463 484 0.76

8 14 0.00053 0.059 14.1 0.1 2 23 490 511 489 511 0.95

9 14 3.8e-05 0.0042 17.7 4.8 1 23 543 565 543 565 0.99

10 14 1.7e-06 0.00018 22.0 3.7 1 23 571 593 571 593 0.96

11 14 0.00088 0.097 13.4 3.9 3 23 601 621 599 621 0.97

12 14 1.2e-06 0.00013 22.5 0.8 1 23 627 649 627 649 0.98

13 14 7.4e-05 0.0081 16.8 0.2 1 23 653 675 653 675 0.99

14 14 0.00032 0.035 14.8 0.2 1 23 683 705 683 705 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.017	1.8	9.4	0.2	6	21	12	27	6	28	0.86
2	14	1.4	1.6e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.39	43	5.1	0.7	1	18	234	248	234	254	0.73
4	14	0.011	1.2	10.0	3.1	1	23	364	386	364	386	0.97
5	14	0.00018	0.02	15.6	0.2	2	23	390	411	390	411	0.97
6	14	0.00091	0.1	13.4	4.9	1	23	422	444	422	444	0.97
7	14	0.028	3.1	8.7	0.1	1	23	463	484	463	484	0.76
8	14	0.00053	0.059	14.1	0.1	2	23	490	511	489	511	0.95
9	14	3.8e-05	0.0042	17.7	4.8	1	23	543	565	543	565	0.99
10	14	1.7e-06	0.00018	22.0	3.7	1	23	571	593	571	593	0.96
11	14	0.00088	0.097	13.4	3.9	3	23	601	621	599	621	0.97
12	14	1.2e-06	0.00013	22.5	0.8	1	23	627	649	627	649	0.98
13	14	7.4e-05	0.0081	16.8	0.2	1	23	653	675	653	675	0.99
14	14	0.00032	0.035	14.8	0.2	1	23	683	705	683	705	0.97

Sequence Information

Coding Sequence: atgggCTCGTTGAATCTTATTTGCCCAATGTGTTGCGGTGAAACGTTTAACAATCCACAGTCATTAAAGTATCACTTACTAAGCATGACGGATAATCTATACTGTCCCGGTTGCTCGCAACGATCTGACTCAGTAATGGCACTCATTCAACATTTAGATCGTTGTGGTTGTGCTGAGTCAGAGACACTGTCTGAATCAAATCGTGAACAAGAACAGGAATCTCAGCAAGAATCTCAACCAGATGCAGAAGTACTAATGgATACAAACGTTGATGGAATAGATCAAAGTTTTTTAGCGACTGTGAATGACAGTGGAATTATGATAGTTGGGGGGCCTCAAACTATACAAGTTGATGAAAATGGAGATATTAAAGTCGTAGAAAAGATGGAAACTGAGGAGACAGAACAGATGGAGCAAAATTCTTTGGAATTTAAGATGGCAGACAAAGTTCCTAATATTAAAACAGAAGAGAAATCTTTAACCCAGGATCAATTAGTAACAATTTCAACCACTTCGGAAACAGATGACAAAAACAgagataaaaatgtaattactaTATTACCTGATGGCTCAGAGCTTCTAGATGGTGGCACTGGTGCTCTTATAAATATAGATCATATAAATGATATAGGTGAATTAGATGAAGATGGACTTCTACATGTTAAACAAGAAATTTGCGAGataGAATCAGAAGCAGTTTATAGTTGTACTAGTTGTGATATGAGCTTTAATTCTCTTGTGGAACATATAAAGCAATTTCATGATGGGCAAGAAGTACTACTTGAAATAGCTGATCAATTAGATGATATACCTACAGTACCTGCATCTAATACCTTACATTCAGAATCAGGAAACGTAGCTAATACTAGACAAAGACAGAGTATGAACACTTTGCGTACAGAAGAATGTGTCGACAGTGAAGGAAGATTGTACACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGATAAAACTCCAGCGCAAACATCACTTCAATCCACTAAAGCACCAATGATTGAGAAGTTCTTTTCTAATGTGGAAGGAGTGAAAGTACGAGAAAAAAGATTAGCTACGACACCAATGAGAATGTACAGATGTAATCAGTGCCTTCAGCAATTTTCCAAACTAGGAAACTTTCGAGTACATGCATGTCTTCATGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTTGCAACACCGAAAGCATTACAATTACATGCAAAAGTACACGAAGGTGAACCTGATCCAAATCAAAAAACTTTCATATGCGAAACTTGTGGTACAGAATTTTGTTCGCACAAAAGCTTGCGCTTACATTCTCGAATGCACGCGCCAGTTAGAGCAAGGCACGTTGACGCACCTGAAGGAACACCTAGTGCAACATTCACATGTCCCGAGTGTgGTAAAACGTTAGCAGAATCGTATAAAGAAGCGCACATGGCATTGCATTCTGGTGACTCTGTAACTTGTACTGTGtgtaatagaaaatttgacTCTGCTGATAGTTTGGCAATGCATGCCGCAGTACATACAGAATTAAGTCAACCACATTCACCGACACCACCTACTACTGTTACTACTGAAACAGCTGCAACTGCCGAACCCGTAGAAAATCAAAAGCCTTATCAGTGTCAACATTGTGGTCGAAGATTTACGAGACCTCatgaaaaagtgaaacacGAACGTATTCATACTGGAGAAAAACCACACGCGTGTgaaGTTTGCGGTAAAACTTTTCGTGTTTCCTATTGTCTGACTTTACACATGAGGACTCATACTGGTGTCAGACCATACGGGTGCCAACATTGTGGCAAAAGATTTAAAGCTTCTTCTGTGTACAATCATCATTTACTTACACATGGAGAAGAACGTGCTTATACGTGTCCTTATTGTCCAAAAACGTTTAAAACGCGTGTTCAATTAGCAGGACACAAAAACAGTCATACTAAACCATTTCGATGTACCGAGTGTTCCCGTCCATTTGCTTCCTTGTATGCTGCGCGTGCTCATATACAAACTCACAAGAaagacaataatttaaaattcagttGTTATATTTGTGGTGCATCTTACGGTAGAGCATTTGCATTGAAGGATCATTTAAAACAACATGGTCAAGATGTGCTAGCTCCACCGGAACCGGCACGGGAAGAAGAAATTCACGAAGGAGAAGATTTTTTGCTTGCAGAAGAAGAAGTTGAGGATGATGAACTAGTTATCCCGTCACCGTTACCCGTTGCACAATCGTCAGAAGCTGATGATACAGAATGA
Protein Sequence: MGSLNLICPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGCAESETLSESNREQEQESQQESQPDAEVLMDTNVDGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEETEQMEQNSLEFKMADKVPNIKTEEKSLTQDQLVTISTTSETDDKNRDKNVITILPDGSELLDGGTGALINIDHINDIGELDEDGLLHVKQEICEIESEAVYSCTSCDMSFNSLVEHIKQFHDGQEVLLEIADQLDDIPTVPASNTLHSESGNVANTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDKTPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLATTPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPTTVTTETAATAEPVENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: iTF_01419139;