Tdav021200.1
Basic Information
- Insect
- Tetragonula davenporti
- Gene Symbol
- -
- Assembly
- GCA_010645165.1
- Location
- WIUW01007642.1:6055-7548[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-13 5e-10 39.2 0.1 3 38 35 69 33 76 0.90 2 2 2.6 6.1e+03 -2.7 0.0 30 38 109 117 109 121 0.84
Sequence Information
- Coding Sequence
- ATGTCTCTTTTACAATTCCGATTAATTCGTGTTACAGGACGAAGGTGTTACACCAGAAGATCCAGTTCCTCTGGAAAGTTCGTGAGATctgatattgatattgaacGTATCCAGTCAGCTATCGAAGCAGTGGCCAGCGGGTTGTCCTTGAGGAAAGCAGCTGAAAAGTTCTCTATATCCAAGTCTGTTCTTCATCGTTACAGTAAAATGGGAATTCTGGGTGTAATGGAGAAATATATGCGAAATGagTCGCGTACGCTGGCCTACCTTAACTGCCAGAAAGTCACCTATCCGTGCAAGAACTGCGGCAAGGTGTACCATTACTACTCCAGCCTGGCAAGACATTTGAAGCATGAGTGTGGCGTGGAACCAAAGTTCCACTGTCCGCTGTGCCCTTACAGAACGAAGCACAAATCCAGCTTGAACACACACTTGAACGGCAGGCATATGAAACTTTTGAGCGAATTCTACACGACGCCAAATGGGAATAAGTTATCGTCATCTATGAACGCTGGAAATTAA
- Protein Sequence
- MSLLQFRLIRVTGRRCYTRRSSSSGKFVRSDIDIERIQSAIEAVASGLSLRKAAEKFSISKSVLHRYSKMGILGVMEKYMRNESRTLAYLNCQKVTYPCKNCGKVYHYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYTTPNGNKLSSSMNAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01420579;
- 90% Identity
- iTF_01420579;
- 80% Identity
- iTF_01419297;