Tcly001548.1
Basic Information
- Insect
- Tetragonula clypearis
- Gene Symbol
- -
- Assembly
- GCA_010645135.1
- Location
- WIUT01012878.1:2876-6171[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6 2.5e+02 3.2 0.3 2 19 98 115 98 118 0.82 2 13 0.0059 0.94 10.8 3.3 2 22 125 145 124 145 0.94 3 13 0.0036 0.58 11.5 5.7 1 23 155 178 155 178 0.92 4 13 0.003 0.48 11.8 4.7 1 23 219 242 219 242 0.96 5 13 0.88 1.4e+02 4.0 0.3 5 23 249 268 248 268 0.94 6 13 0.00052 0.083 14.2 1.5 2 23 275 296 274 296 0.96 7 13 0.14 22 6.5 4.5 1 21 323 343 323 344 0.92 8 13 0.019 3.1 9.2 0.4 1 22 442 463 442 463 0.95 9 13 2.9e-05 0.0046 18.1 1.3 2 23 471 493 470 493 0.93 10 13 0.39 62 5.1 3.6 3 20 505 522 503 526 0.88 11 13 0.35 55 5.3 0.5 2 19 544 561 543 562 0.94 12 13 7.9 1.3e+03 1.0 6.4 1 23 571 594 571 594 0.91 13 13 0.0023 0.37 12.1 5.5 1 23 605 628 605 628 0.94
Sequence Information
- Coding Sequence
- ATGtCCTTCAAACATGGaatgcaaataaaagaaaagcgcCAAATCTGTGATAACGTGTCATCAGTTGATACAAGTACAACAAATCAAAGTGAAACAACAGATGAATCCTCTGCACGTGTTAAttgtgcaaatgaaaattctgtgCTGCCTGAAGAAAGTGTTTCTCTGAAAAACAATATAtcaaatgaaaacaatatatCAAATGAAAGTATATCAAGTAACAAACAAAACCGACCAGTTcttaacgaagaaaatagTAAACATAAACtgtctcgaaaaaaaaagaaaccaactTGTGATGTTTGTTTTTTAACCTTTGATAATAAAACTTCTTcggaaatacataaaaaagcATATACTTCCAATGTGTTGAAGTGTCACAAATGCTCCGCAGTCTTCCATAAATCACATTCTCTGACTGTTCATTTGAAAATGCCTACCTGTAAAAAATGTATGATTggatataattgtaatttttgtaatcgaAAGTTTTCCTATAAAAAGCATGTCCAAGCTCATTTATTCCATGCACACTgtgatgaaatatttcctaCCGAACGTGAAAGTGTGAAAATACCTGTTGTATCGTTGGAGAAGGCAAATTTCTCGGACGATGTATTAGTGAAATCTAAGAAGGACCTTGGCCAAAAAACCTTTCAGTGTCACATATGCAAGAAATCATTCTTTTTGAAAGAGAACCGGCGTGAACACGTGAAACTGTTTCACTCAATCTATATGTCGAGTATATGCAATGCACGTTACACATCCATGAAGAAGTTACTAAGTCATTACATACGTCAACATATTGTGTTCAAACGAAAGGAATGTTGCGTGtgttacgaaaatttcaactcgTCAGCCTTATTGAAGCGACACATGATCCTGCATTGTGTGAAAACTATAAGGTCCAGCAAGGACACTCTGCCAGTTGACGTTGATATAAACTGCGTTGCGTTTAAGAAACAACACAGATGCAAAGGTTGTCACAAACGATTTTGGCTGAAATCGTGTTTGGAGCAACACGAGAAAGTATGTGGCCGACTGAAATGCTTGATACGCGACAAACGGGATGCATCTCGCGTGAAACGTGAATCTTCGTGTCCTAAAACATCGAGTAATGAGAAAATCGACAGAGTAGGAACACCTGATCTAGAAAAAATGCTAGCTGCCCTGGATGGGACAGAAACTGTGGAAAATTCGGCCTCAAGTATGCCtgtttcaaaaagaaataattccaaTCGCTCTTCCTCGATCCGAAAAAGCATAATCAACGGGATTGCATGCGTGAAGGGCTACGAGACTACTAACATAGAGAAAACGAAGTTCCCTTGCACCATTTGTGGAATACAGTTCcagatatttcagaatttgtGCATACACGAGCGTACCTACTGTCAACCAGCCACTAACAAATGTGACCATTGTAATACAGTATTTTCTACTAAAAGGTTATTGCAACAACACGTACTTGCTGCTCACACACCGTCGTACAAGAAGAATTGCAAGCTATTTTGCCAATTTTGTAATCAGGGATTCAATAAGAGAAAGAAGCTTCGAATGCACGAGGGACACTTCCACGATAAACAGGATGTTCCACCAGCGCCGAACACCGATTCAGAAAATAAACTAATCTGTAATATATGTCACTTGCTGTTCGAATCTTATGAACACTTTATTGAACATAACGTATACTACTCTAAAGAACAAACTTATTTATGTTCAATATGTGACAAATTGTTTTTAGGACTATATCAGCTTCATCATCATCACAAGTTTAAGCATTATCCGGATAAAGTACGAAAATTGTACTCTTACAAATGTAACATTTGTAACGAAGGCTTCAACTACGAATCACATTTTCATGCACATAAGTTACATGTCCATTTAGACGATTCGTCCGCTCCATCCAAATTGAACAAGTCGCATCAAACTGTTTGCGTAAGTGAACCTGATTCTTTGAatagattaaaatttgaaaagagtGAGAATGTTTGA
- Protein Sequence
- MSFKHGMQIKEKRQICDNVSSVDTSTTNQSETTDESSARVNCANENSVLPEESVSLKNNISNENNISNESISSNKQNRPVLNEENSKHKLSRKKKKPTCDVCFLTFDNKTSSEIHKKAYTSNVLKCHKCSAVFHKSHSLTVHLKMPTCKKCMIGYNCNFCNRKFSYKKHVQAHLFHAHCDEIFPTERESVKIPVVSLEKANFSDDVLVKSKKDLGQKTFQCHICKKSFFLKENRREHVKLFHSIYMSSICNARYTSMKKLLSHYIRQHIVFKRKECCVCYENFNSSALLKRHMILHCVKTIRSSKDTLPVDVDINCVAFKKQHRCKGCHKRFWLKSCLEQHEKVCGRLKCLIRDKRDASRVKRESSCPKTSSNEKIDRVGTPDLEKMLAALDGTETVENSASSMPVSKRNNSNRSSSIRKSIINGIACVKGYETTNIEKTKFPCTICGIQFQIFQNLCIHERTYCQPATNKCDHCNTVFSTKRLLQQHVLAAHTPSYKKNCKLFCQFCNQGFNKRKKLRMHEGHFHDKQDVPPAPNTDSENKLICNICHLLFESYEHFIEHNVYYSKEQTYLCSICDKLFLGLYQLHHHHKFKHYPDKVRKLYSYKCNICNEGFNYESHFHAHKLHVHLDDSSAPSKLNKSHQTVCVSEPDSLNRLKFEKSENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418635;
- 90% Identity
- iTF_01418635;
- 80% Identity
- -