Basic Information

Insect: Tetragonula clypearis
Gene Symbol: -
Assembly: GCA_010645135.1
Location: WIUT01005605.1:6024-9719[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.7e-05 0.0043 18.2 1.4 1 23 448 470 448 470 0.96

2 8 0.0016 0.26 12.6 1.6 1 20 476 495 476 498 0.94

3 8 6.6e-06 0.0011 20.1 1.4 1 23 504 526 504 526 0.98

4 8 3.9e-05 0.0062 17.7 4.4 1 21 532 552 532 554 0.95

5 8 5.2e-06 0.00083 20.5 5.6 1 23 560 582 560 582 0.99

6 8 1.2e-05 0.0019 19.3 5.3 1 23 588 610 588 610 0.97

7 8 4.5e-05 0.0072 17.5 6.9 1 23 616 638 616 638 0.96

8 8 1.5 2.4e+02 3.3 0.6 1 8 644 651 644 651 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.7e-05	0.0043	18.2	1.4	1	23	448	470	448	470	0.96
2	8	0.0016	0.26	12.6	1.6	1	20	476	495	476	498	0.94
3	8	6.6e-06	0.0011	20.1	1.4	1	23	504	526	504	526	0.98
4	8	3.9e-05	0.0062	17.7	4.4	1	21	532	552	532	554	0.95
5	8	5.2e-06	0.00083	20.5	5.6	1	23	560	582	560	582	0.99
6	8	1.2e-05	0.0019	19.3	5.3	1	23	588	610	588	610	0.97
7	8	4.5e-05	0.0072	17.5	6.9	1	23	616	638	616	638	0.96
8	8	1.5	2.4e+02	3.3	0.6	1	8	644	651	644	651	0.95

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGAAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAATCAAGAAATGGCGTTAACTTCCAGTTCACATCATCAATCAACACCTAcacatcatcatcatcaatcTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGcAGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGACCACATATACCTGCCAGCGTCAGTCATTTACAGGCAGCACATGCACAAATGCAGCAACAAATGCAGGCAGCACAACAGCAACAGCTGCATCAACAGCAGCAAccgcaacagcagcagcagcagcaacaacaacaacaatctCACCATCAAATGCAAAATCATCAAAATGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGGGATGATAACAAAGTGAAAGATGAAGGTGGAAGTTGTACAACTGAACGTTGCAGTGAGAATCAGGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAATCATCTCAGGATTTACAACAAAGTCTTatgcaacagcaacaacagcagcagcagcaacaaatTGGCGTGAACATAAGTGGGAATTCATCGAACGAAAGTGGAAGTCAAAATAATACAGAGAAacctgaaaaagaaaaagaattgcgTCAACTGAATATGACGCAATTTCAAGTGCCAGATTTAAAACCAGGAGGTCACATGATGGACGTAAGAACAGCTGATGGTTCAGTTGTGAAAATCAGTGCTGGAAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTATAAGGTAAATGTCGAGGATATTAATCAACTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACTTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAGAATGGAACTCCAATTGTACAACaagttcaattaaataaatttgatattaaatcaAGTGATGGTGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGCGAAATatgtggaaaaatttttcagtttcgcTATCAGCTTATTGTTCATCGTAGATATCATACGGAAAGGAAACCTTTCACTTGTcagGTGTGTGGCAAAGCctttttaaatgcaaatgaTTTGACACGGCATGGAAAATGTCATTTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTGGAACGTCATATGAAGCGACATGCTACCGATAAACCATATAATTGTACTGTATGTGGGAAAAGTTTTGCAAGAAAAGAACATTTAGATAACCATACGCGTTGTCATACTGGAGAAACACCTTACAGgTGTCAATATTGTTCAAAGACCTTTACTAGGAAAGAACACATGGTAAATCATGTTCGTAAACATACGGGTGAAACACCTCATCGATGtgatatttgtaaaaagagCTTTACTCGCAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGCCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGTAAGTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQSSVSSSSHHSSLQPNSQQIPVSLPGLNLDGPHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSENQVHCQVQCDLQLQSSQDLQQSLMQQQQQQQQQQIGVNISGNSSNESGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00864909;
90% Identity: iTF_01421121;
80% Identity: -