Basic Information

Insect: Tetragonula clypearis
Gene Symbol: -
Assembly: GCA_010645135.1
Location: WIUT01002776.1:1038-5207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.5 5.6e+02 2.1 6.9 2 23 240 262 239 262 0.97

2 21 2.6 4.2e+02 2.5 2.8 1 23 312 334 312 334 0.91

3 21 0.28 45 5.5 1.4 1 23 383 405 383 405 0.98

4 21 0.03 4.8 8.6 0.2 1 19 462 480 462 482 0.94

5 21 8.3 1.3e+03 0.9 3.6 1 22 495 516 495 518 0.77

6 21 0.00074 0.12 13.7 3.2 1 23 523 545 523 546 0.95

7 21 0.00024 0.038 15.2 0.3 1 23 591 613 591 613 0.97

8 21 0.00059 0.094 14.0 0.1 1 23 619 641 619 641 0.97

9 21 3.7e-06 0.00059 20.9 1.2 2 23 685 707 685 707 0.96

10 21 0.089 14 7.1 1.9 2 23 715 737 714 737 0.84

11 21 0.00095 0.15 13.3 1.5 2 23 746 768 745 768 0.95

12 21 0.00011 0.018 16.2 1.3 1 23 777 799 777 799 0.96

13 21 0.0045 0.72 11.2 0.3 1 20 849 868 849 868 0.97

14 21 0.16 26 6.3 0.3 1 23 887 909 887 909 0.96

15 21 0.00064 0.1 13.9 1.5 2 23 923 944 923 944 0.96

16 21 0.019 3.1 9.2 4.9 3 23 968 989 967 989 0.92

17 21 0.013 2.1 9.7 1.4 2 23 1041 1063 1040 1063 0.93

18 21 0.0024 0.38 12.1 0.6 2 23 1092 1114 1091 1114 0.92

19 21 0.029 4.6 8.7 0.1 1 23 1121 1145 1121 1145 0.95

20 21 0.058 9.3 7.7 0.9 1 23 1150 1173 1150 1173 0.97

21 21 0.042 6.8 8.1 0.7 2 23 1203 1225 1203 1225 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.5	5.6e+02	2.1	6.9	2	23	240	262	239	262	0.97
2	21	2.6	4.2e+02	2.5	2.8	1	23	312	334	312	334	0.91
3	21	0.28	45	5.5	1.4	1	23	383	405	383	405	0.98
4	21	0.03	4.8	8.6	0.2	1	19	462	480	462	482	0.94
5	21	8.3	1.3e+03	0.9	3.6	1	22	495	516	495	518	0.77
6	21	0.00074	0.12	13.7	3.2	1	23	523	545	523	546	0.95
7	21	0.00024	0.038	15.2	0.3	1	23	591	613	591	613	0.97
8	21	0.00059	0.094	14.0	0.1	1	23	619	641	619	641	0.97
9	21	3.7e-06	0.00059	20.9	1.2	2	23	685	707	685	707	0.96
10	21	0.089	14	7.1	1.9	2	23	715	737	714	737	0.84
11	21	0.00095	0.15	13.3	1.5	2	23	746	768	745	768	0.95
12	21	0.00011	0.018	16.2	1.3	1	23	777	799	777	799	0.96
13	21	0.0045	0.72	11.2	0.3	1	20	849	868	849	868	0.97
14	21	0.16	26	6.3	0.3	1	23	887	909	887	909	0.96
15	21	0.00064	0.1	13.9	1.5	2	23	923	944	923	944	0.96
16	21	0.019	3.1	9.2	4.9	3	23	968	989	967	989	0.92
17	21	0.013	2.1	9.7	1.4	2	23	1041	1063	1040	1063	0.93
18	21	0.0024	0.38	12.1	0.6	2	23	1092	1114	1091	1114	0.92
19	21	0.029	4.6	8.7	0.1	1	23	1121	1145	1121	1145	0.95
20	21	0.058	9.3	7.7	0.9	1	23	1150	1173	1150	1173	0.97
21	21	0.042	6.8	8.1	0.7	2	23	1203	1225	1203	1225	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGAGTTGCAAAATATGGAAAACGTGTGCAGGCTCTGCCTATCCACCGACGAGCCAAAATTGTCGGTGTTCGAAACGGAAGACTCTCTGTTGACCATGGCTAGCAAAATACAAGCTTGCCTATCGATTCAGATTTCAACGACAGACAAATTATCAACACAGATATGCGCACAATgtgttaaaaatgtaaatcaatGGCATAGTTACAAAGAAACCTGTTTAAGTTCACAAGAGAAGTTGCATCAGTGGTTGGAACGGCAGCATATGCAACAAAGTCCCAtgGTTGTAACGATCAAGGATGAACCTGTTGATTTGGACTTCTATGAAGACAACATCGAGATCATTTCAGAATCTACCACTGATTCAAATTTGGAAGCTACTAATCTTGAAGAGAATACAAATCACTTAGAAGATAGTGCTCGATGTCAGAAAGTAACTGATGATGAAGTAGTCGTAGATCAAGATCAACCAGTCTTGATGAAAGACATGAATGTTTCTATAAAACCTGAGCTACAAGATGACTGCGATACGGATTGTACTATAGAAATAGAATCCGTTACTGGTAATGAACTTGTCGATAATCCAAAGGAAAGGATCATGGAAGCTGATTCCACTCAGAAATCCAATGCGTCTGCATCAgcaaacaagaaaaaaactaGAAGAGGTCCTCATACTCACTTTAGGGGTGCACGTGTTTTTAAACAGAAGTGTGTACATTGTCAAATTAATTTGCATTCTAAGCATTCTTATGCAAATCATATGCAAAGATTTCACGCTGACAAACAGAATGGTAGCGTCAGTAAACCGGAATTAAAAGATGAGGAAGAGCTTGTCGAAGATCTGGAAGATGAATTAATGAGTATGGAAAAGGATGCTCCATTGACACAAGtgcaacaaaatattattggCCAATTGAAGACATTTTCATGTTATTCCTGTCAACAAAGCTTCAACGATCGCAGAAGCACGCTTTTCCATATTCGTCAGCATATGCCCGACCTGAGACCGCACACGTGTATCGCGTGTTTAACAGAGTTTCCAGATCGATCAATGTACAAGTTACATTGCGGAGCATCGTTTGAATGTGCAATGAAAATCGCCCTTGTTGTACCGAAACAAGGCGAGGAAAAATACTTCACGTGTAATATGTGTTTACGTCCTATGCAGAATAGGAAACAATTGCTTAGCCATTTGTCAAAACATTCGGATAAACAGTACGAGCAACTGGTATGCCCGACACGATCTGCTCCTAAATTGAAACCAGTGACTCCTCTGCCACCTTTGAAGCAAGAATCACGAAAAAGAccgtttgaagaaaattatattttaaacataccTAGCCCTTACAAAAATGGTGATCCTGCGCATAATCATATGTGTGATTTGTGTGGTATGATCTACAGATATAAGCCAAATATGTTGAGACACAAGGATCTATGTCAACGTTTATCATCGGATGTTAGAACATCCTACAGATGTGTTCACTGTGGCATGACATATCTGGTATTCAAGAAATTCCATTCTCATATTACACAGGAgcataaaaagaaagatttcatATGTTCTGTATGTGGCAGCAAATTCAAGTCTCCTAGTAATTATTTGGAACATCACAAGGGACATCATGCCAACCACGATCAACAACATTCTCTTGATTCGAAAAGCAATTTAACGAAGATCCCGCAGAACATTTCAAATAAGGACTGGGACACATTTGAGGCTGAAGTAAATGCTAAAAAATTGTCCGACAGTAATCAGTACAGCTGTGCTCTTTGCAATTTGGAATTTACTACCAGAGCCGAATTAACAGAACACAGAAATCTACAcctgaaagtgaaaatttattcttgcGTCATCTGTCGTAGCATGTTCAGCAGCGCAGGTGCTTTGGAAATTCACATGAAGGATCATGGCATAGAAGAcccgaatgaaagaaatgcaAACAGCTCTTGCGTAGAGTATGGTACGGTGGAAGAAGAATCAAAAGATTCGAACTCAATGAACGTAAGTGCCACTTCAGATCCTGGTGTTAAAAAGAACGAATGCAATAAGtgtggaaaaatattctcgaataGCGCGAATCGTAGAAGACATATAAGAAATCTTCACAACGTTACCAGAGGCCATCTCAGCTGTTCCTACTGTTGGCGAACATTCAAGAGCAAAGAAACACACGACCGACACGTTACAATCGATCATTTAAAATCCTCAAAATCCATGCTTCGATGTTCTCGATGTCCAAAGACTTTCTTCTTCCAAGCCAATCTGAATCTTCATTTTGAGACTACGCATTCCGGGAAATCATTTTCAGCTGGCCACAAATGCGATATTTGCGGTAAAACTTTCATGGAAGAAACGTCTCTGAAAATACACAGAAGCTGGCACAATCGAGCAAACTCTAGACTGAGTTTGTACTTCATGAAGAAGGAAGATCCAAAACAAGAGGAACCTTTGAATTCTAATACAACCCGGCCAGCGAGAGCGCGAAAATCTTACCCGAATTCACCTTCAACAAAAACTACTGGTCAAAATTTCCAATGTCAAGTCTGCAGTGAAAAGTTCAATGATGTAACAGAACTTAGGACACACTTATGGGACGTACACTGTGCACGCaacaaaaatgagaaaaatttcccTGATGGCGAATTCCATTGTGAACTTTGTATGAATGTTTTCCCGGATAAGGAAACGTTGGATGTGCATTTGCAATGGCATAAAGCTCAACCAATTCTCAACGATATAAAGTCTGATAACACGTGTGACATTTGTGGGAAATCATACAGCTCAAAGAAGATATTGTCCAGACACAAGAAACTTCACAAGTCCACAATTGCAGCTGCTGCGAAGTTACAATCAACTGGCAAAAACTTAGCTAGCAGTCAACCTTTATGCACCATTTGTCACAAGGTGTTCAGCAATAATCGCTCGCTCCAGTGTCATAGACTGAATCTGCATGCCAACATATTCAACCAACAATCTCAACAGGTACAGAAAAACACAAGAAGGACGTCTCAAGAAGAGCCAAGAgctaaaagaataaaattagagGAAGAGGACAGGCAAACACCTTCTGCCATGGATGCTTCGAGCGCGGGCAAAAAATTCGTCATGTGTCACGTTTGTAGGAAATTCTTTGCAAACATGAGTGTGCTTTATAAACACAAACAGTTGGCACACAAGACTCATACGAATATGGTAAAAAATCTCACTAAATCGTACCAAATAGAATGCATACCGTTGCCCAACAATGATGGCAAAGTCTCTTGTAacatttgttacaaaaaattcCCTGGCGTGTCGAATTTGCGTCAGCACTTTACTGTAAAACACAAGAATGCCCCTGTTAAGTATGCTTGTACTGTAGATGGGTGCAAACTCACATTTCCTACGCCGATGGTTCTAAAGAACCACGAATTGTCGCACACCAGCATCATCTTTAGTTGCAACTTATGCAATAGGCATGTGTTCAGTAGGCCTGCTATGTCGAATCACATACTGACGGTGCACAACATCGTCTACAACGCTGAGAGCAGCAAAAACTTCCACAGAGAACTGGATTTGGGCAAATACGTGGTAGAGGGTGCAGTAGATGCTACCTGCCCTCAATGCAAGATCAAGTATCCCAACAACAGGGCTATGAAGATTCATTACTTCAAGTATCACGAAAACCCAAACGAATAa
Protein Sequence: MDEVVELQNMENVCRLCLSTDEPKLSVFETEDSLLTMASKIQACLSIQISTTDKLSTQICAQCVKNVNQWHSYKETCLSSQEKLHQWLERQHMQQSPMVVTIKDEPVDLDFYEDNIEIISESTTDSNLEATNLEENTNHLEDSARCQKVTDDEVVVDQDQPVLMKDMNVSIKPELQDDCDTDCTIEIESVTGNELVDNPKERIMEADSTQKSNASASANKKKTRRGPHTHFRGARVFKQKCVHCQINLHSKHSYANHMQRFHADKQNGSVSKPELKDEEELVEDLEDELMSMEKDAPLTQVQQNIIGQLKTFSCYSCQQSFNDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPKQGEEKYFTCNMCLRPMQNRKQLLSHLSKHSDKQYEQLVCPTRSAPKLKPVTPLPPLKQESRKRPFEENYILNIPSPYKNGDPAHNHMCDLCGMIYRYKPNMLRHKDLCQRLSSDVRTSYRCVHCGMTYLVFKKFHSHITQEHKKKDFICSVCGSKFKSPSNYLEHHKGHHANHDQQHSLDSKSNLTKIPQNISNKDWDTFEAEVNAKKLSDSNQYSCALCNLEFTTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGTVEEESKDSNSMNVSATSDPGVKKNECNKCGKIFSNSANRRRHIRNLHNVTRGHLSCSYCWRTFKSKETHDRHVTIDHLKSSKSMLRCSRCPKTFFFQANLNLHFETTHSGKSFSAGHKCDICGKTFMEETSLKIHRSWHNRANSRLSLYFMKKEDPKQEEPLNSNTTRPARARKSYPNSPSTKTTGQNFQCQVCSEKFNDVTELRTHLWDVHCARNKNEKNFPDGEFHCELCMNVFPDKETLDVHLQWHKAQPILNDIKSDNTCDICGKSYSSKKILSRHKKLHKSTIAAAAKLQSTGKNLASSQPLCTICHKVFSNNRSLQCHRLNLHANIFNQQSQQVQKNTRRTSQEEPRAKRIKLEEEDRQTPSAMDASSAGKKFVMCHVCRKFFANMSVLYKHKQLAHKTHTNMVKNLTKSYQIECIPLPNNDGKVSCNICYKKFPGVSNLRQHFTVKHKNAPVKYACTVDGCKLTFPTPMVLKNHELSHTSIIFSCNLCNRHVFSRPAMSNHILTVHNIVYNAESSKNFHRELDLGKYVVEGAVDATCPQCKIKYPNNRAMKIHYFKYHENPNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417894;
90% Identity: iTF_01417839;
80% Identity: -