Tcly015331.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonula clypearis
Gene Symbol
gtf3a
Assembly
GCA_010645135.1
Location
WIUT01005227.1:5059-9405[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00011 0.017 16.3 0.1 2 23 732 753 731 753 0.97
2 16 0.72 1.1e+02 4.3 1.1 3 23 787 807 786 807 0.97
3 16 0.00022 0.035 15.3 1.2 3 23 816 837 815 837 0.98
4 16 0.0023 0.36 12.1 2.0 1 23 844 867 844 867 0.95
5 16 8e-05 0.013 16.7 0.7 1 23 873 896 873 896 0.94
6 16 1.1 1.7e+02 3.7 2.5 2 23 904 924 904 924 0.94
7 16 1.2e-07 1.9e-05 25.6 2.1 2 23 930 951 929 951 0.97
8 16 1.9e-06 0.0003 21.8 0.2 1 23 957 979 957 979 0.99
9 16 0.00047 0.075 14.3 2.4 2 23 991 1013 990 1013 0.95
10 16 0.0066 1.1 10.7 2.5 1 23 1019 1042 1019 1042 0.96
11 16 0.021 3.4 9.1 3.8 3 23 1065 1086 1064 1086 0.95
12 16 0.00098 0.16 13.3 1.4 2 23 1093 1115 1092 1115 0.96
13 16 3.2e-05 0.0052 18.0 1.0 2 23 1123 1144 1122 1144 0.96
14 16 0.001 0.16 13.2 2.3 1 23 1150 1173 1150 1173 0.96
15 16 0.27 44 5.6 3.2 2 23 1180 1201 1179 1201 0.96
16 16 0.008 1.3 10.4 2.6 1 23 1207 1229 1207 1229 0.98

Sequence Information

Coding Sequence
ATGAAGCATATTGAGATTAAAAACAAGGATCACAATTACAGCGAAGTGAAATTACGTAATTTCCAGCACGCTACTAgcaatattctaaatatatgcGACGACGATATTAAAACGGTATGCAAATCAAATAAATCTGGCATAATATCGAACAAAGAGATATTTGGTCAGATTAAGGATATCaatgaattgaagaaaatcacGCCGCGTGTGAAACTATTGACTCACGATGCGAATAGTTTGAACGAACTAACTAAAATCTCTTTGCACAATAAAATATCTGCGCAAaagaaattgtcgatattgGAACAAACCAAACAGGAGTTGAAAAAGTATTGCAGAACTTGCGCTGGCTTGAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTGAGCCAACAAATTAGACATTTAGAGGACATAAATCCGTACGATAGCTTATCGACTCAAATGTGCATGGATTGTATTTGCGACTTGAAAATGAGTTACAAgtttttcatgcaaattaaGAAAGCAGAGGTTAAATTGAAATCCATTCACATTACTCTGACTGATACGGCAACAAGAAACATGgaattgaataaaacaaaGCCTGTAGCGAGCCTTGAAAGGCAAATGGATAATATTGCTGAAAGCAACGTGAAAAGTCCATCCACgagtaaagaaaataatgaaaatgttccaaaaatatctgcaaatatcttttcattaaaaaatgacaaagtgcttgaaaaaaatgttgggAAAGTAAGTGACAAGGAGTCAGAAAATAAGATTGAAGTTGAGATTTTTGAAGAATCAACTATTCTAGAAAATAGCGATGATAATGAATCTATAGAAGAATTTGATCCAGACGATCCTCCTTTTCAACCTGATAGCTCTGATGTAGCGGAATCTGATGACGAAGTAGAGATACCAAGTGCAAAAAGGCGACATATTCAACAGAAGGAAAGTATGAAACAATGTTCACAATCAATGTCTGTCTCTGATAATAATTCAGTCTcggatgataaaaatattgacataAAGCAAACAACGTATAATTATGACACTTGTCTAAAAacatatgttaaaataaaggATACAGATTGTAATAGTCAATCTACTGAATCACACAGCATTGTTAATTctgaaactatatataatactgaAAGTACAAAAGAATGTTCAAAGCAACcaaatatattgaaacgtAGATTGTTGTTACAATCTAGAAAAGAGTCTGCGGATGAAACCGATGAAAATTGTCAGTCAAATATTTCTGACAAATGTGGAAGCCATAAGGATCTAAAAGTACAAAAACTTGATGTAAACAATTCTCTAAACAGTAATCAAGAGGATGGGATCATGTATGTTACTGTGAAAGGATCTAAAccgaatgaaatattgttagtaaaagttaaaaaaatggaaaaatcattagaaaagaaagatgataaatctgtggggaaaaaaaatttcgatgttAAACCAATGGACAAGATTTTAAAACGATATGAAACATTcgttacgaaagaaaaagatttatttccaGAACGAACAAAAAAGTCAGAAATAAGAGAACAGATTATAGAAGAGCAAATAGAAGAATATAAGAAGAAGCGAGAAAAAGTATTAGGTGGACATACTAATATTGTTGCACTTCCAAAACTTGAGGAATCTCGTTGTTTCAAACGTAATGAAAATCAAGATAATCAAAGATCTCTTCTATCTATGGAGAGTGATTCTGTTGTAACTGTACAGTTTAATAAAGATGATGgtgaatcgaatgaaaatattaatagtgaagatgatatttcagaaattgcTGAATCAACCAAAGAAAAGTctgcaaatgaaaaaacatATGTAAATACTGAAGAATATTTGTCACATTTAGCAAAACTTAAATTGAAATGGgaagaagcaaaaaagaagaaagagtcACTTCAGAAAGAACTAGATGAATCTTATACAGAGggaaatattgagaaattaacaagaattttaggagaaaaggaaaagaacttGCAAGATTTCCAAGATTATCTGAAACAACGTAAAATCGTAATTACAAGATTAAAAGATGAagatattatttctctttacGAAGACAGAAATAATGCAGTGCTTAAAAACAGTTTACCTGACTTGATAGATGAAAGTCAACCGGCAGATTATATTCCGGAAGAACATTATTTAGAATGTGATTATTGTCCAGAGACATTTGCTTCTAAAGAAGTTCTCgaagaacatttgaaaatgcacgattataaaattatgcatTTCTGTGAAGATTGTATGGAAGAATTTCCAACAAAtaaagcgaaacgaaatcataatgtaatttgtataaaaaaattactatgtAAATATTGTGACATAATGTTGGATTCAAAAGGGAAAAAGCGTCAGCATGAACAAAAACATTGTGATAGTATGTATGGACAGTTATGTGATGTATgtggtgaaaaatttaaacatcaaGGAACATTGGATCAACATGTAAAAACACAGCACATGAGTTGggagaaaatatatcaatgtcCAAAGTGTCCTAAAAAATTTGCATTCAAACAAAAACTtagttttcatttgaaatctGTACACACGACGTTAAGGGCCTATTTGTGCGAGGATTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTAAGACATCATAGAATACGTAAACATCAACCTGTAGGTAATAAAAGAGAATGTCCGGTATGTCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCGTACACTATTCAGTGTCCACACTGtgacaaaatgtttaaaaatagttCAACTTTAAAACAACATGTGAGAATTCACGAAGACCAGCGTCAATATCGATGTGATACTTGTGGTGTTGGATTTAATAGACGAGATGGCTTGAGGTTACATATGAGAGTGCACGAAAAAACTGATAGTAGAGGATTAAAAGAATGTTCGTGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCGACGCTTGTCATACATAGAAACCGAGTTCATAAAGATGGTAGACAATATACTTGCCATATATGTAACAGATCGATGATTTCAACTAGATCGTTAGAGTGGCATATGTCTCATATACACAATGAATCACTTCCTGGTGTCGTGAAAGAAGACGTAGACGGACCACCAGAGAAGAAAAGAGCATCGTGTTATCATTGTAACAAGACATTCAAAACAGAAATGATTTTGAGAACACATATTAAAAACACACATATGGAGAAAGATCCTATGAAGTGTTTAGACTGTGAATTGACATTTACTTCCGAAGTTAGATTAAGACATCATATGATGGTTACACACAATAGATTAGAAGGAACTTTGCCTTGTCCACATTGTCCAAAGAGGTTTGTCAATCAACTCAGATTAAAAACTCATATGATATCTCATTCTGAAGAAAGGCCATATACTTGTGAAATctgtggatttaatttaaaaactaaaatacAGTTGATCAAGCATCATCAGAATAGGCATAGCGATGAAAGACCTTTACAGTGTAGATATTGCCCTTGGAGATGTAAACAAGTTAGCGCTCTTGTATGTCATGAAAGAACTCATACAAATGAAAGGCCATATTCTTGTAGCGTGTGTAGGCaacgttttaaatatttaggtgataaaaataaacacgAAAGACGACACGAAAGCTTAGGAGGATCTGGATTTAAAAGAATAGTACTTGGCCGAAACATCAAAGCTACCAAAGCACAGGAAGATTCTTCTTGTTCTGAACACGATCaagaaagtttaaataatACGGAATCTCAGGTTCCTGAAAGTGAATATCAAGACCAGACAGATCAACAATTTGAGGAAGAGCAAATAGTGAAATTTGAGGAAGAACAAATAGTGAAGTTCGAAGAAGAGCAAAtagttaaatttgaagaacaaGAAATAACGGAAGAATATGAACAAGTATATGAACAGGAATATGAAGAGACATCTAGAGAGGCTTCAGATGCAGCAGAAGTTATAATGAACATGGAAGATACTACTGTTTACACAGAAGAAGTAACTACAGATAATATCGAACCTACAGAAATTATGGCAGATGAAATGATGACGAACGAGATATTACAATCAGGTGCTGTAGTTCATTTGCAACAAGAAGATGATTCAGGGAAAATACAAGTGATTCCAGTGATGTTATCTTTGCCTGATTTATCTGATGCAAATACAGAGGTCAATTTAGCTACTGCAtctattatgtataataattga
Protein Sequence
MKHIEIKNKDHNYSEVKLRNFQHATSNILNICDDDIKTVCKSNKSGIISNKEIFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKKLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIRHLEDINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHITLTDTATRNMELNKTKPVASLERQMDNIAESNVKSPSTSKENNENVPKISANIFSLKNDKVLEKNVGKVSDKESENKIEVEIFEESTILENSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPSAKRRHIQQKESMKQCSQSMSVSDNNSVSDDKNIDIKQTTYNYDTCLKTYVKIKDTDCNSQSTESHSIVNSETIYNTESTKECSKQPNILKRRLLLQSRKESADETDENCQSNISDKCGSHKDLKVQKLDVNNSLNSNQEDGIMYVTVKGSKPNEILLVKVKKMEKSLEKKDDKSVGKKNFDVKPMDKILKRYETFVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHTNIVALPKLEESRCFKRNENQDNQRSLLSMESDSVVTVQFNKDDGESNENINSEDDISEIAESTKEKSANEKTYVNTEEYLSHLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLTRILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPADYIPEEHYLECDYCPETFASKEVLEEHLKMHDYKIMHFCEDCMEEFPTNKAKRNHNVICIKKLLCKYCDIMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEDVDGPPEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKATKAQEDSSCSEHDQESLNNTESQVPESEYQDQTDQQFEEEQIVKFEEEQIVKFEEEQIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTTDNIEPTEIMADEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684931;
90% Identity
-
80% Identity
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