Basic Information

Insect: Tetragonula clypearis
Gene Symbol: -
Assembly: GCA_010645135.1
Location: WIUT01011006.1:1-2786[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00026 0.042 15.1 0.4 2 23 204 225 203 225 0.95

2 11 0.0029 0.47 11.8 0.9 1 23 233 256 233 256 0.95

3 11 0.00013 0.021 16.0 2.3 1 23 312 334 312 334 0.98

4 11 1.4e-06 0.00023 22.2 1.5 2 23 385 406 384 406 0.97

5 11 1.3e-05 0.0021 19.2 0.8 1 23 411 434 411 434 0.96

6 11 3.7e-06 0.00058 20.9 0.3 1 23 469 491 469 491 0.98

7 11 6.2e-07 9.9e-05 23.4 0.9 1 23 501 523 501 523 0.96

8 11 1.7e-06 0.00028 21.9 1.2 1 23 529 551 529 551 0.99

9 11 8.8e-06 0.0014 19.7 0.2 1 23 557 579 557 579 0.98

10 11 6.7e-05 0.011 17.0 4.6 1 23 585 607 585 607 0.98

11 11 0.00026 0.042 15.1 0.4 1 21 613 633 613 634 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00026	0.042	15.1	0.4	2	23	204	225	203	225	0.95
2	11	0.0029	0.47	11.8	0.9	1	23	233	256	233	256	0.95
3	11	0.00013	0.021	16.0	2.3	1	23	312	334	312	334	0.98
4	11	1.4e-06	0.00023	22.2	1.5	2	23	385	406	384	406	0.97
5	11	1.3e-05	0.0021	19.2	0.8	1	23	411	434	411	434	0.96
6	11	3.7e-06	0.00058	20.9	0.3	1	23	469	491	469	491	0.98
7	11	6.2e-07	9.9e-05	23.4	0.9	1	23	501	523	501	523	0.96
8	11	1.7e-06	0.00028	21.9	1.2	1	23	529	551	529	551	0.99
9	11	8.8e-06	0.0014	19.7	0.2	1	23	557	579	557	579	0.98
10	11	6.7e-05	0.011	17.0	4.6	1	23	585	607	585	607	0.98
11	11	0.00026	0.042	15.1	0.4	1	21	613	633	613	634	0.94

Sequence Information

Coding Sequence: GTTGAAGAAGGAGATGGTTTACCACCAGTGATCTGTTTGCCTTGTAATCAGCGTTTAGATGCATCGTATGattttaaatgtcaaatacaaaattcagATGAAAAACTTCGTCAAATTCTAAAGCTGAAATCATCTTCCAATAATTCTGTTACCAGCGCCAGTATAGTTACAGCAATAATTGCTGATGTGATATCTAGTGTAATAtcttctgaaaaagaaaatacagaaaagcAAGAAGTTTGTTCTACAAATTTTTGCCCTGATAATTTTTGCTTCGCGAAAGATGAAACTTCTTTTTGTCTCAATtcggagaaaaatttattttgttatgaAAAAGAATCACAGAGTGAATTAAATGGTATTGAACAAAGAAAGAACCTAGACGATGCAAATgtttataaaagtttattagAGGATGATTCTGTAAGACAAATCAGTTCAATGAAACAAGACTTTACTTTATTGGATGATCATATAATACAAACtaaagatatttcattaaaggaagaagaaagtattGAAGAAAATCAACAAATAGAAGAGACGTCAAAGATAGATAATATTCAAGATGATGAAGAGAAACCATTAATTTCACGCACAACTAGATTACGTTGTACACAGTGTATTAAATCTTTTCGTACAAAAGTGGCCTTGCAGAGACATGCCATTGTACATAAACGTAAAACTAAATTACGCTACGTTTGTTATGTTTGTGATAAACAATATTCTACCcttgcaaaagtaaaaaatcatGTTGCAATTTGTCATGAACCTCatgatagaaaagaaaatattcaacataaaagaattaattatgaaCAAAGTAAAGCAATAACGAGTGTACAAGATAAAAGAATTAGTAATGTTCAAgataagaaaataaaaattcaaaaaactgACGATTCTTCTAAAGAACAACGAAAAAGCCTAAAATTTACCTGTGAAGTTTGTTCAAAGCAATTTACATATCAAAAGTCCTTTATCACACATGCTAAAAGTCATCCGGAGTATAAGTTTGAAGAATTGGACGATTCTTCCGAATGTTCAACAAAAGAAAGATCTACAGAAActattgaagaagaagaagaagaaaacgaagaagaggaagaggaagaggatgAGGAAGACGAGAATCTTCCAGCTGAAAGTTTACAATGCACTCAATgtggaaaattatttgcaacaaAGAGAAATCTTAAGAGGCATGTTTCTACACATAGTGGATTAAAGTATACATGTGAAACGTGTGGTAAAGGATTTTCAAGAGtggataaattaaaagatcatGAACAGTCAAAACATAAGgctgaattatttgaaaattctgattTGGACGATAAAGAAGATATGGACAATAAAGGAGACTAtttagaaggaaaaaagaaagATCGTCACAACAGACCTCATAAATGTGCAATTTGCCCTAAATCATTTGCACAAGCTCAATCACTAGCGAATCACATAGAACGTCATAAACGGGTGAAAGAAACTCAAAAACGATTTCTTTGTGAAGTCTGCAGTAAATGTTTTGCACAGAGTGGTTCTTTGGTTGCTCATATGCGTACCCATACTGGAGTTAAACCATACGTTTGTAACGTATGTAGTAGAGCTTTTACAAAGAGCacttatttacaattacatttgCGCACTCATAGCGGGGAAAAACCTTATATTTGTCAGTATTGTAGCAGGGCCTTTGCGCGTGCTAATACATTAGCAAGGCACATAACAATGCATACAGGAGAAGCGAAATATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACTTCGTTAAATGAACACACTTACACACACACTGGACAAAGACCATATGCgtgtaaaatttgtacaaagaGATATAATAATGCTGGATCACTTTATGCACATAGAAAGAAGTGCAAGGCACAGCAGCTATCTAATCCTGGATTTGCAGTTTCTGTGGAAAATACTGTATCACAACAAGAAGTAGATGTTCCGCAGGTTTTGATTTATTCACACAGGAAACTAGTAGAGGATGCAACTGTCGGGCAAGTTACGCCCACGCCACAGTATATGATCGCAAACGTACATAATCAAAAGAATTTGGgatcaaatattatacagtCATTTCCAGTGGATGACCCAAATGTTTATACAAAGCCATTTAAGAACCcctattatacaatttatccaaatatgtaa
Protein Sequence: VEEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNNSVTSASIVTAIIADVISSVISSEKENTEKQEVCSTNFCPDNFCFAKDETSFCLNSEKNLFCYEKESQSELNGIEQRKNLDDANVYKSLLEDDSVRQISSMKQDFTLLDDHIIQTKDISLKEEESIEENQQIEETSKIDNIQDDEEKPLISRTTRLRCTQCIKSFRTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHEPHDRKENIQHKRINYEQSKAITSVQDKRISNVQDKKIKIQKTDDSSKEQRKSLKFTCEVCSKQFTYQKSFITHAKSHPEYKFEELDDSSECSTKERSTETIEEEEEENEEEEEEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFENSDLDDKEDMDNKGDYLEGKKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVENTVSQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMIANVHNQKNLGSNIIQSFPVDDPNVYTKPFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: -