Tcly005075.1
Basic Information
- Insect
- Tetragonula clypearis
- Gene Symbol
- -
- Assembly
- GCA_010645135.1
- Location
- WIUT01003336.1:17197-19672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.39 12.1 1.2 2 23 124 145 123 145 0.93 2 11 0.00045 0.072 14.4 4.9 2 23 216 237 215 237 0.95 3 11 4.4e-06 0.0007 20.7 3.3 1 23 383 405 383 405 0.97 4 11 5.5e-06 0.00088 20.4 1.3 1 23 411 433 411 433 0.98 5 11 1.1e-06 0.00017 22.6 1.3 1 23 439 461 439 461 0.97 6 11 8.9e-05 0.014 16.6 1.7 1 23 477 499 477 499 0.98 7 11 5.7e-09 9.1e-07 29.8 1.1 2 23 506 527 505 527 0.98 8 11 5e-07 7.9e-05 23.7 3.1 1 23 533 555 533 555 0.98 9 11 2.6e-06 0.00042 21.4 2.9 1 23 561 583 561 583 0.95 10 11 5.9e-05 0.0095 17.1 4.4 1 23 589 611 589 611 0.96 11 11 2.8e-05 0.0045 18.1 5.0 1 23 617 639 617 639 0.99
Sequence Information
- Coding Sequence
- ATGTTTATCgttacgaaagaaattgacGGCGAAAATATTGGTAAATTATGTCGTACGTGTTTAAGAGAGGATGGCGATAAAATGGTTTGTTTGTTCGTGGGTCCGGCCGAGTCGTCCCTTGCTGCTAAATTACGATCTCTCTCCTGTCTCGaaGTTTGGCAAGGCGATGGTCTTCCAGAGAAAATGTGTGACCGTTGTGTAACCAGAGCGGAATCAGCTCTATTGTACAGAGAACAATGTCGTGCAGCTGACAGAGCATTAAGACAAGCTGTTTTAAAGGTTTCAGGTGTAACGTCGTACGCTGCAGGTTACAAATTATATCAACAAAACCAAGGTTTCGTGCCTATTCAAAACTCCCATAAGACTTTGAAGTGCATAGAATGTGGAGCAgtatttacaaattaccaGGATCTCTGTACCCACAGCAGATCACATTTGCCTTTTGTCCAAGATGATATACCAATGCAACATATGCACATAGTAGAATCGCAGAAtccatatttcaattttaactttgGTCACTTGAGCTCTAATTTAACTAACGAGAGCATTCAGCATGCGCAGTTATCTCCATTAATTAGATCTAACGTGATGCAAATGATTCCAACGAACGGAGAAAATCCTAGTCGAGCTGCTTGCGCGCTACATTGTTCTCTGTGCAATCGCACGTTCACCAATAGGCACCAATTAATAAGTCACAGTATTACTCACACTTCGGAAAGCATTGAAATGCCTTGCGATAACGAGAATATAGATATCTGTGAGAATTCAAATCAAATTCCACAAAACCTAAGTTACGAGAGATCGATTAATTCCGTTGGGAACTCTATTCAGAATTTGTCGTATCACAGGTCAACGACAAACGATAATAACGAGATGCAAACCTTGGGATTCCCAGAAAATATGGATCTAGGAGACGAAGTTCGAGAATGTAGCTCTCGAATAAGAAATACAACGATACCTGATTCGGACTCGTACAACATAGATAATTGTCGTGCTGCGAAATTTGCGAAAAGTTTCGAACGTACGGACAACAGAGAAAGTATCGATAGATATCAGTCATCGTACGCTTCGAATCTTAATTACAGCAAGCAGCAAATCGATAACGAACAATCTGTAACTGCGCAACAGGTACAGGTGAAAAAGTACAAATGCGACGTATGCTCCAAGtcattttctcaaaaatcgaaattgttGACACATCGATTCTCTCACTCTGGCCAACAACCTTTCAAGTGTCTCAGCTGCGAGAAGGGCTACTCGTCAAAGAGCAAGCTAAATGCTCATATGCGTCTACACACGAAAACTAATGTACATCCATGTAAGATGTgcgataaaatatttgcatatcCATCTTATCTACGGGAACACTTGAAAACACACAAACGAAACAGTAGCAACAACGCGAAGATCGAAGAGAATAAAACATTCGAATGCGTTAACTGCAAGAAAAAATTCCGTTTACTAAAAAATCTGAAAGCACACGAACGACTTCACACTGGAAAAGGTCTAGTACGATGCGAAATATGCGATAAGACGTTTAGCCGAAATTACAATCTGAAGATCCATTTACGAACGCACAAAGCAACAAGGCCACACAAGTGCGAGTATTGCAATAAATGTTTCGCACAAAAAGGCAATCTCGCGGAACATGTGAGAATTCACACGAAAGTAAAACCTTTCGAGTGTAAAGTATGTGAAAAGCGCTTCTCGCAGTCAAGCCatttgaaaaatcacgaaGTATCCCATACCACCGTTAGGCAACATCAATGTCGATTGTGCGGCAAGCGATTTAAACTGGCGAATCATTTGAAGAGACATCTGATTTTGCACAATGGTACGAAATCGTACAAATGCCATCAGTGTAATCAGTTGTTCTCTCAAGCATTTAGCCTCACGAGGCATTTAAAAAGACACGATTCGCATACTTAA
- Protein Sequence
- MFIVTKEIDGENIGKLCRTCLREDGDKMVCLFVGPAESSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAVLKVSGVTSYAAGYKLYQQNQGFVPIQNSHKTLKCIECGAVFTNYQDLCTHSRSHLPFVQDDIPMQHMHIVESQNPYFNFNFGHLSSNLTNESIQHAQLSPLIRSNVMQMIPTNGENPSRAACALHCSLCNRTFTNRHQLISHSITHTSESIEMPCDNENIDICENSNQIPQNLSYERSINSVGNSIQNLSYHRSTTNDNNEMQTLGFPENMDLGDEVRECSSRIRNTTIPDSDSYNIDNCRAAKFAKSFERTDNRESIDRYQSSYASNLNYSKQQIDNEQSVTAQQVQVKKYKCDVCSKSFSQKSKLLTHRFSHSGQQPFKCLSCEKGYSSKSKLNAHMRLHTKTNVHPCKMCDKIFAYPSYLREHLKTHKRNSSNNAKIEENKTFECVNCKKKFRLLKNLKAHERLHTGKGLVRCEICDKTFSRNYNLKIHLRTHKATRPHKCEYCNKCFAQKGNLAEHVRIHTKVKPFECKVCEKRFSQSSHLKNHEVSHTTVRQHQCRLCGKRFKLANHLKRHLILHNGTKSYKCHQCNQLFSQAFSLTRHLKRHDSHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539757;
- 90% Identity
- iTF_00873936;
- 80% Identity
- -