Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: -
Assembly: GCA_010645115.1
Location: WIUU01002080.1:21755-24851[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.042 5.8 8.2 0.6 6 23 259 276 256 276 0.92

2 13 0.079 11 7.3 0.7 1 23 281 304 281 304 0.95

3 13 0.00041 0.057 14.5 0.2 3 20 318 335 316 336 0.94

4 13 0.0018 0.24 12.5 0.7 3 23 352 372 352 372 0.98

5 13 2.2e-07 3.1e-05 24.7 1.6 2 23 416 437 415 437 0.97

6 13 0.0039 0.53 11.4 0.5 1 23 442 465 442 465 0.93

7 13 0.81 1.1e+02 4.1 1.6 2 23 539 560 539 560 0.96

8 13 3.2e-05 0.0044 18.0 3.8 1 23 569 591 569 591 0.95

9 13 2.9e-06 0.0004 21.3 3.1 1 23 600 622 600 622 0.99

10 13 0.067 9.3 7.5 5.1 1 21 628 648 628 649 0.94

11 13 0.0004 0.056 14.5 2.8 1 23 675 697 675 697 0.99

12 13 0.17 24 6.2 0.0 1 23 762 785 762 785 0.97

13 13 1.5e-06 0.0002 22.2 4.7 1 23 790 813 790 813 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.042	5.8	8.2	0.6	6	23	259	276	256	276	0.92
2	13	0.079	11	7.3	0.7	1	23	281	304	281	304	0.95
3	13	0.00041	0.057	14.5	0.2	3	20	318	335	316	336	0.94
4	13	0.0018	0.24	12.5	0.7	3	23	352	372	352	372	0.98
5	13	2.2e-07	3.1e-05	24.7	1.6	2	23	416	437	415	437	0.97
6	13	0.0039	0.53	11.4	0.5	1	23	442	465	442	465	0.93
7	13	0.81	1.1e+02	4.1	1.6	2	23	539	560	539	560	0.96
8	13	3.2e-05	0.0044	18.0	3.8	1	23	569	591	569	591	0.95
9	13	2.9e-06	0.0004	21.3	3.1	1	23	600	622	600	622	0.99
10	13	0.067	9.3	7.5	5.1	1	21	628	648	628	649	0.94
11	13	0.0004	0.056	14.5	2.8	1	23	675	697	675	697	0.99
12	13	0.17	24	6.2	0.0	1	23	762	785	762	785	0.97
13	13	1.5e-06	0.0002	22.2	4.7	1	23	790	813	790	813	0.96

Sequence Information

Coding Sequence: ATGGCTGTGCCTAACAAGTGGGAGAATGCTTGTAGATTATGCTCGGAAGAGAAGAACGAAATGTTGTCGATTTTTGGCAATGAAGGTGTACAGCGTAAAGTGGCACAAAAGTTACGCGCCTGCCTGCCAGTCTTAGTGTACAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGTGCTGCCAGGCTGGACGATGTTTACGAGTTTAGAGAATATTGTTTAAGCGTTTACAAGAGCATGCACTTGAAGCTGTTAGcttataaaaatgttgaatccgttcaaatttatttagaagCAATGAGAAATTCCCCTGATCCTTGTCAGGCTCAACTATGGAGAGAAAAGGCTAGAGCACCGCCACCTTTAGTACCTTTGCCAGTTTCACTGCCAGTTGAAACTCCATCAATGCCGATAGATGTTAGCCAGGAGCATCAAAATAATTGCATGGAGTCATTACCTGAATTACCATGCGAAGTAGAGATCAAAGAAATGACTGCAGAACCAATATTAGAAACAAGTGTTAACGTGTACGAATCGtcacataaaaataatgtagaaaatgagctgtataataaattacatataataatggaacaaaatacaaatttattaaaagaggGAAGCAATAACTTGAGACAAGGAGTACAGGTaaaggaggaagaaaagaggacGAGTATTTTAGAACAAGTGCTAATGGGTAGTTTGACAATGAATGACAGGAAAGACTTAAATTCAAAAACAAAGCTATCCTCTAAGTGGTGGTGTGCTCCTTGCAATAGTTATTACAGGACAAAGGAAAGTTTAATGAAACATATGCAATTACATTGTCCAAGAAAGTACAATTGCAGAAAATGTTCTGCTTGCTTTGAGTTAGTGGAAGACTTAGCTAAACATGAAGCTACTAATCACTTAAAAGTAACGTTAGACTTTGATAGAAGTGTTCTAGATTGTGACCAATGTGACAGACAATTTGTTAGTTGGGAAATGCTGAAGAAACATAGATTATGTGATCATTTAactcaaataaatgaaattgggACCAATACATGGTGCTCCTTATGCAATAGATTTTTCCCAAGTATGGAAAATTATCAAAGTCATATTCAGTTACATGAAATCAGTAATTATACATCAACAAAAGCATTACCATTAATGAATCAACAGTCGGTAAAAGTTCTGAAAAGCGAAGAAACTTCAAAGGAAGTGAAAAGGGAACACTTTGTAGATGCTTCTAAATCACTTACTTGTCCTACTTGtggaaaaATCTGTACTCAACAAAGTGCGTTATCAAATCATATGCGCACTCACGAACCAAAAAGACATAAATGTGATATATGTGGACGATCATTTGGACTTTTTATACGTCTAGCAGCTCATAGAATGAGCGAACATAGTCAACAACCTACAATGTCGCCTGTAATGGCTAGTGTTGAACAAGAAGAAGCTTTGAATGCTGAAAGAGAAGCTAAAGAAGCAAGAGAAGCCAAAACTCGCGCATCAAAAACTAGAACATATTCAGAgatGATAGAAAGGGAGGATATTCCTAACCATGAAGAACCGCCTCCAAAAAGAAATGTTCCATTAAATACCAATGCATTTAAAAATGTGGCAAGATGTGGTATCTGTTTACAGTGGTTTAGCGATCACACTACGATGTTAACGCATTTACAGACACATTCGGATAATTAcacttgtaaaaatttcacctgccatatatgtaaaaaatcttttaaagaAAAGTGGCAATTATTTAGACATGaggTATCTCATAAACCAACTGACTCTGCAACAATGTACACATGCACAGTATGCAACAAATCGTTCGtagataaaaatacatataaaatgcaTCAGAAAACGCACATTGTTGACAAAACATATCACTGTCCTAAGTgtaataagattttttttaaagaagtaTGTTTGCTAACTCATCAGTGCATAGAAACTATGTTCGGTAAAAAAGGAGTTTCCtcaaaatcttcgaaaaagtCTGCCGCATTGAGTAATAGCAAAAGTTATAAATGTTCCAAATGTAATGCGTCTTTCAATAGTTTTCAGTCGAAAAATTCTCATATGAGAGTGCATATGGGAAGTTCACATACAGCGGTACGAAAGCAAGATTTAAAGGAAGaatcagaagaagaaaaaactatGCCGAAATTAATTCCTGAAACATCATTGGAGTATTCGGTTTCTACTATCGAACCgaagatagaaataaatgaagaaagtACACCACCTCCTGTTAAACGAACTTTAATCAGGACAACCGGCGGGTATCGCTGTGGAGTATGTCAATCTCCATTTATTTTACGAGAATTAGCTGTTGCACATTTAAGATCTGCACATCCTTTGATGCCATATCAATGCCCTTACTGTAAAAAAAGGTTCACCACGCAATATACATTCACGCATCATATTAAAGCAGATCATCCTGACGAGCATGAGAATTGA
Protein Sequence: MAVPNKWENACRLCSEEKNEMLSIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMHLKLLAYKNVESVQIYLEAMRNSPDPCQAQLWREKARAPPPLVPLPVSLPVETPSMPIDVSQEHQNNCMESLPELPCEVEIKEMTAEPILETSVNVYESSHKNNVENELYNKLHIIMEQNTNLLKEGSNNLRQGVQVKEEEKRTSILEQVLMGSLTMNDRKDLNSKTKLSSKWWCAPCNSYYRTKESLMKHMQLHCPRKYNCRKCSACFELVEDLAKHEATNHLKVTLDFDRSVLDCDQCDRQFVSWEMLKKHRLCDHLTQINEIGTNTWCSLCNRFFPSMENYQSHIQLHEISNYTSTKALPLMNQQSVKVLKSEETSKEVKREHFVDASKSLTCPTCGKICTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPVMASVEQEEALNAEREAKEAREAKTRASKTRTYSEMIEREDIPNHEEPPPKRNVPLNTNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFTCHICKKSFKEKWQLFRHEVSHKPTDSATMYTCTVCNKSFVDKNTYKMHQKTHIVDKTYHCPKCNKIFFKEVCLLTHQCIETMFGKKGVSSKSSKKSAALSNSKSYKCSKCNASFNSFQSKNSHMRVHMGSSHTAVRKQDLKEESEEEKTMPKLIPETSLEYSVSTIEPKIEINEESTPPPVKRTLIRTTGGYRCGVCQSPFILRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKADHPDEHEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01123225;
90% Identity: iTF_00983144;
80% Identity: iTF_01419800;