Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: mecom-b
Assembly: GCA_010645115.1
Location: WIUU01004665.1:2610-8753[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.018 2.4 9.4 0.2 2 20 44 62 43 66 0.87

2 9 0.37 51 5.2 0.1 1 23 73 96 73 96 0.93

3 9 1.2e-05 0.0016 19.3 1.8 1 23 102 129 102 130 0.93

4 9 3.2e-06 0.00044 21.1 2.6 1 23 136 158 136 158 0.95

5 9 1.9e-05 0.0027 18.7 5.0 1 23 164 186 164 186 0.99

6 9 0.00038 0.053 14.6 0.7 2 21 194 213 193 214 0.95

7 9 4.5e-09 6.3e-07 30.1 1.2 1 23 565 587 565 587 0.99

8 9 2.4e-07 3.3e-05 24.7 1.7 1 23 593 616 593 616 0.97

9 9 6.7e-06 0.00093 20.1 3.4 1 23 622 644 622 644 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.018	2.4	9.4	0.2	2	20	44	62	43	66	0.87
2	9	0.37	51	5.2	0.1	1	23	73	96	73	96	0.93
3	9	1.2e-05	0.0016	19.3	1.8	1	23	102	129	102	130	0.93
4	9	3.2e-06	0.00044	21.1	2.6	1	23	136	158	136	158	0.95
5	9	1.9e-05	0.0027	18.7	5.0	1	23	164	186	164	186	0.99
6	9	0.00038	0.053	14.6	0.7	2	21	194	213	193	214	0.95
7	9	4.5e-09	6.3e-07	30.1	1.2	1	23	565	587	565	587	0.99
8	9	2.4e-07	3.3e-05	24.7	1.7	1	23	593	616	593	616	0.97
9	9	6.7e-06	0.00093	20.1	3.4	1	23	622	644	622	644	0.99

Sequence Information

Coding Sequence: ATGAAGGTCCGTTGGGGGCCATCGCATGACCATATGGTTGGGACAAGTGTAGCGGCAGATTTAAATAACCCCTCGCAACATAGTGGCACCGTAGACGAGGATAAAGAGGACGAGGAGGAAGGTGAGACCAGGTGTCCCGTCTGCGACAAACCGTTTCAAGACATTGAACTGTTGGATAGTCACGTGGTTGCCTGTCACAGATACCCAGCGGAACAGCATCGCTGCGACAGCTGTCCTCGTGCGTACGCCTGGCGGCCACTGCTGGTTCGTCACCGTGCGATCGTTCATGGTGATCTCCGGAACTATCCCTGCGAGAACTGTCCAAAGTCGGACAAACCGCAGGTCTTCACGGACCCGTCGAATCTGCAGCGACACATCAGGACCCATCACGTGGGTGCGAGGAGCCACGCGTGCACCGAGTGCGGGAAGACGTTCGCCACCAGTTCCGGCCTTAAGCAGCACACCCATATCCACAGCAGCGTGAAGCCGTTCCAGTGCGAGGTGTGCTTCAAAGCGTACACTCAGTTCTCAAATCTATGCCGACACAAACGCATGCACGCGGATTGCCGTATGCAGATCAAGTGCGTTAAATGCGGACAGTCGTTCAGCACGGTCACTTCGTTATCAAAGCATAAGCGGTTCTGCGATTCAACACCGCCGACCGGTCCACCTGGCGCGATGCCGCAATTACCGACTCCGGCACCCAGCCCATTTCTTGTCTATCCTAGACCTCCTGTCAGTCTCCCGGGAGGTTTGCCTTTCTACCCGCCTAGTCTAATGGGGCCGTATCCAGGGATTTTTCCAAATGCGTCCAATTTCTTGAACACTCCTCTTTTGTTCCCGCACAAAGTTGAGGAATCTGAGAAGAGGTGCGACAGTCCAAAGAAGGAACGCTTCACTCCGCCGAGGGTTCTGCCGCAACATAGCAAGATATCACCCTCAACGGCCGAGGAAGCTACGTCCTCCTTCAGACCATCCCCGGCTAGGCCACCCGTTCAACCAACCCCGGAGAGTGACGACGATCCTTCCAAGAAACGGGAGAAAGACAGGAGCAACGAAAAAAAGGCAGATCCTGAAAATGTATCGAAAACtacgaacgaagaaacaacGGATCAACCTTTGGATCTGAGAGTGCaaacaaagaaacaacgaacgaaTGTGAATGTTACCAACAGAAAGAGCCCATCGCCAGCGCCAACACCGATGGAGGAAGTTCCAGTTCCTCTGGATCCTCCGAAACCCGAGGAAGAGACGTCCATGTTAATGGAAGTCGATTCCAAGGACATGGCCAGAAGTcctcaattaaaaattagtttaCCCGCAGAACAACCTCCTACTAGTACACCGCACATGGCGTATCCCAGACCGATTCATCCGATGTTTCTGGAGGCCATGTACCGCGGGCCAACGAGTTCTTTCCCAGGATTTCCAGGCGGACCACCGCCTCCTGGAAGTGGAACGGAACCGAGACTCTTGCCTCCGCTACCACCGTTCGGGACACCGCGTGGACTTCCTTTTTTAGGAACACTCATGAACGGGCTCAGCGGCGCTAGGCCAGGAAGCGGGGGATTCGACCTGCTTGCTAGGCCGCCACTGGGACCGTTCCCTGGCGTGAAACCCTTTCAGGACACCGTGATTCCACCccatcatcatcaccatcatcatcacgCTCACGGCAAAATGAAAGACCGATATTCCTGCAAGTTCTGCGGGAAGGTATTCCCCAGATCTGCCAATTTGACGAGACATTTACGCACACACACCGGCGAACAACCTTACAAATGCAAGTACTGCGAACGATCCTTTAGCATCTCCAGTAATCTTCAGCGGCACGTGAGGAATATCCACGACAAGCAGAGGCCGTTCAAGTGTCCACTCTGCGAGAGGTGTTTTGGCCAACAGACGAATTTAGACAGACATTTGAAGAAACACGAAGCCGACGACGGCAGTGGCGTTGTTTCCGTCGCGGATTCACCGGGGAGCAGTAATGAAAATGAACGGGAGGATAcgtatttcgacgaaattagGTCGTTCATGGGGAAGGTGACTTACGGCGGTGAGGCTGGCTACGGATTACCCCCTCACCCGGCCTATTTGCCCAGTAGATTGCACGAGATACACGAGTCCAAGATGGAAACCGAGTACGACGAAGACGAGGATAGCGAGGAAGGAGTCTCTCCTCTGGATGAAGCGGATGGCTTGTCGCCTGCAGAAGCCAAAGAATCGACTCCACCACCGCAGTATGATCTGAAGCTGAGGGAGAAGCAGGAATTGCTTAACAATAACACGGCCGAGCCAGTTATCGAAATTTCGACATAG
Protein Sequence: MKVRWGPSHDHMVGTSVAADLNNPSQHSGTVDEDKEDEEEGETRCPVCDKPFQDIELLDSHVVACHRYPAEQHRCDSCPRAYAWRPLLVRHRAIVHGDLRNYPCENCPKSDKPQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTPPTGPPGAMPQLPTPAPSPFLVYPRPPVSLPGGLPFYPPSLMGPYPGIFPNASNFLNTPLLFPHKVEESEKRCDSPKKERFTPPRVLPQHSKISPSTAEEATSSFRPSPARPPVQPTPESDDDPSKKREKDRSNEKKADPENVSKTTNEETTDQPLDLRVQTKKQRTNVNVTNRKSPSPAPTPMEEVPVPLDPPKPEEETSMLMEVDSKDMARSPQLKISLPAEQPPTSTPHMAYPRPIHPMFLEAMYRGPTSSFPGFPGGPPPPGSGTEPRLLPPLPPFGTPRGLPFLGTLMNGLSGARPGSGGFDLLARPPLGPFPGVKPFQDTVIPPHHHHHHHHAHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVTYGGEAGYGLPPHPAYLPSRLHEIHESKMETEYDEDEDSEEGVSPLDEADGLSPAEAKESTPPPQYDLKLREKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539779;
90% Identity: iTF_00118172;
80% Identity: -