Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: gtf3a
Assembly: GCA_010645115.1
Location: WIUU01000407.1:4437-8908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00011 0.015 16.3 0.1 2 23 731 752 730 752 0.97

2 16 0.62 86 4.5 1.7 3 23 786 806 785 806 0.98

3 16 0.00022 0.031 15.3 1.2 3 23 815 836 814 836 0.98

4 16 0.0023 0.31 12.1 2.0 1 23 843 866 843 866 0.95

5 16 8e-05 0.011 16.7 0.7 1 23 872 895 872 895 0.94

6 16 1.1 1.5e+02 3.7 2.5 2 23 903 923 903 923 0.94

7 16 1.2e-07 1.6e-05 25.6 2.1 2 23 929 950 928 950 0.97

8 16 1.9e-06 0.00026 21.8 0.2 1 23 956 978 956 978 0.99

9 16 0.00047 0.065 14.3 2.4 2 23 990 1012 989 1012 0.95

10 16 0.0066 0.92 10.7 2.5 1 23 1018 1041 1018 1041 0.96

11 16 0.021 2.9 9.1 3.8 3 23 1064 1085 1063 1085 0.95

12 16 0.00098 0.14 13.3 1.4 2 23 1092 1114 1091 1114 0.96

13 16 3.2e-05 0.0045 18.0 1.0 2 23 1122 1143 1121 1143 0.96

14 16 0.001 0.14 13.2 2.3 1 23 1149 1172 1149 1172 0.96

15 16 0.27 38 5.6 3.2 2 23 1179 1200 1178 1200 0.96

16 16 0.008 1.1 10.4 2.6 1 23 1206 1228 1206 1228 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00011	0.015	16.3	0.1	2	23	731	752	730	752	0.97
2	16	0.62	86	4.5	1.7	3	23	786	806	785	806	0.98
3	16	0.00022	0.031	15.3	1.2	3	23	815	836	814	836	0.98
4	16	0.0023	0.31	12.1	2.0	1	23	843	866	843	866	0.95
5	16	8e-05	0.011	16.7	0.7	1	23	872	895	872	895	0.94
6	16	1.1	1.5e+02	3.7	2.5	2	23	903	923	903	923	0.94
7	16	1.2e-07	1.6e-05	25.6	2.1	2	23	929	950	928	950	0.97
8	16	1.9e-06	0.00026	21.8	0.2	1	23	956	978	956	978	0.99
9	16	0.00047	0.065	14.3	2.4	2	23	990	1012	989	1012	0.95
10	16	0.0066	0.92	10.7	2.5	1	23	1018	1041	1018	1041	0.96
11	16	0.021	2.9	9.1	3.8	3	23	1064	1085	1063	1085	0.95
12	16	0.00098	0.14	13.3	1.4	2	23	1092	1114	1091	1114	0.96
13	16	3.2e-05	0.0045	18.0	1.0	2	23	1122	1143	1121	1143	0.96
14	16	0.001	0.14	13.2	2.3	1	23	1149	1172	1149	1172	0.96
15	16	0.27	38	5.6	3.2	2	23	1179	1200	1178	1200	0.96
16	16	0.008	1.1	10.4	2.6	1	23	1206	1228	1206	1228	0.98

Sequence Information

Coding Sequence: ATGAAGCatactgaaattaaaaacaagGATCATAATTATAGCGAAGTGAAATTACGTAATTTCCAGCACGCTACTagtaatattctaaatatatgcGACAATGATATTAAAACAGTATGCAAATCGAATAAATCTGGCATAATATCAAACAAAGAGATATTTGGTCAGATTAAAGACATCAAtgaattgaagaaaatcaCGCCACGTGTGAAACTATTGACTCACGATGCAAATAGTTTAAACGAATTAACTAAAATCTCTTTGCACAATAAAATATCCGcacaaaagaaattatcgatattgGAACAAACGAAACAGGAGTTGAAAAAGTATTGCAGAACTTGTGCCGGCTTAAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTAAGCCAACAAATTAGACATTTAGAGGACATAAATCCGTATGATAGCTTATCGACTCAAATGTGCATGGATTGTATTTGCGACTTGAAAATGAGTTATAAgttttttatgcaaattaagAAAGCAGAGGTTAAATTGAAATCCATTCACATTACTCTGACTGATACGGCAACAAGAAACATGGAATTGAATAAAACAAAGCCTGTAGCAAGTCTTGAAaaacaaatggaaaatattgcTGAAAGCAATGTCAAAAGTCCATCCACAAGCaaagaaaataacgagaaTGTTCCAAAAATATCtgcaaatatcttttcattaaaaaatgataaagtaCTTGAAAAAAGTGTTCGGAAAGTAAGTCACAAGGAGTCAGAAAATAAGATTGAAGTTGAGATTTTTGAAGAATCAACTATTCTACAAAATAGTGATGATAATGAATCTATAGAAGAATTTGATCCAGACGATCCTCCTTTTCAACCTGATAGCTCTGACGTAGCAGAATCTGATGATGAAGTAGAGATACCAAATGCGAAAAGACGACATATTCAACAGAAGGAAAGTATGAAACAATGTTCACAATCAATTTCTGTCTCCGATAATAATTCAGTCTcggatgataaaaatattgacatAAAGCAAACAACGTATAATTATGATACTTGTCTAAAAacatatgttaaaataaaggATACAGATTGTAATAGTCAATCTACTGAATCACACAGCATTATTAATTctgaaactatatataatactgaAAGTACAAAAGAATGTTCAAAGCAACCAAATATATTGAAACGTAGATTGTTATTACAATCTAAAAAAGAGTCTGCGGAAGAAACCGATGAAAATTGTCAGTCaaatatttctgataaatGTGGAAGCCATAAGGatttaaaagtacaaaaacTTGATGTAAACAATTCTCTAAACAGTAATCAAGAGGATGGAATCATGTATGTTACTGTGAAAGGATCTAAAccgaatgaaatattgttagtaaaagttaaaaaaatggaaaaaacattagaaaaaaaagatgacaAATCTgtagggaaaaaaaattttgatattaaaccAATGGACAAGATTTTAAAACGATATGAAACATTcgttacgaaagaaaaagatttatttccaGAACGAACAAAAAAGTCGGAAATAAGAGAACAGATTATAGAAGAACAAATAgaagaatataagaaaaagcgagagaaagTATTAGGTGGACATACTAATATTGTTGCACTTCCAAAACTTGAAGAATCTCGTTGTTTTAAACGTAATGAAAATCAAGATAATCAAAGATCTCTTACTATAGAAAGTGATTCTGTTGTAAATGTACAGTTTGATAAAGATGATGGTGAATTGGATGCAAATATTAATAGTGAAGatgatatttcagaaattgcTGAATCAACCAAAGAAAAGTCTGCAAATGAAAAAACATATGTAAATACTGAAGAATATTTGTCACATTTAGCAAAACTTAAATTGAAATGGGaagaagcaaaaaagaaaaaagagtcACTTCAAAAAGAACTAGATGAATCTTATACAGAAggaaatattgagaaattaacaagaattttaggagaaaaagaaaaaaacttgcaAGATTTCCAAGATTATCTGAAACAacgtaaaattgtaattacaagaTTAAAAGATGAagatattatttctctttacGAAGACAGAAATAATGCAGTGCTTAAAAACAGTTTACCTGACTTGATAGATGAAAGTCAACCGGCAGATTATATTCCAGAAGAACATTATTTGGAATGTGATTATTGTCCAGAGACATTTGCTTCTAAAGAAGTTCTTgaagaacatttgaaaatgcatgattataaaattatgcatTTTTGTGAAGATTGTATGGAAGAATTTCCAACAAATAAAGCAAAACGAAATCATaatgtaatttgtataaaaaaattactatgtAAATATTGTGACACGATGTTGGATTCAAAAGGGAAAAAGCGTCAGCATGAACAAAAACATTGTGATAGTATGTATGGACAGTTATGTGATGTATgtggtgaaaaatttaaacatcaaGGAACATTGGATCAACATGTAAAAACACAACACATGAGTTGGgagaaaatatatcaatgtCCAAAGTGTCCTAAAAAATTTGCATTCAAGCAAAAACTTagttttcatttgaaatctGTACACACAACATTAAGGGCCTATTTATGTGAGGATTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTAAGACATCATAGAATACGTAAACATCAACCTGTAGGTAATAAAAGAGAATGTCCAGTATGTCATAAATTAGTGCCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATACACTATTCAGTGTCCACACTGTgacaaaatgtttaaaaatagttCAACTTTAAAACAACATGTGAGAATTCACGAAGACCAGCGTCAATATCGATGCGATACTTGTGGTGTTGGATTCAATAGACGAGATGGCTTAAGGTTACATATGAGAGTGCATGAAAAAACTGATAGTAGAGGATTAAAAGAATGTTCGTGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCAACGCTTGTCATACATAGAAACCGAGTTCATAAAGATGGTAGACAATATACTTGCCATATATGTAACAGATCGATGATTTCAACTAGATCGTTAGAGTGGCATATGTCTCATATACACAATGAATCACTTCCTGGTGTCGTAAAAGAAGACGTAGATGGACCaccagaaaagaaaagagcatCGTGTTATCATTGTAACAAGACATTCAAAACAGAAATGATTTTGAGAACGCATATTAAAAACACACATATGGAGAAAGATCCTATGAAGTGTTTAGACTGTGAATTGACATTTACTTCCGAAGTTAGATTAAGACATCATATGATGGTTACACACAATAGATTAGAAGGAACTTTGCCTTGTCCACATTGTCCAAAGAGGTTTGTGAATCAACTCAGATTAAAAACTCATATGATATCTCATTCTGAAGAAAGGCCATATACTTGTGAAATctgtggatttaatttaaaaactaaaatacAGTTGATCAAGCATCATCAAAATAGGCATAGCGATGAAAGACCTTTACAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGCGCTCTTGTATGTCATGAGAGAACTCATACAAATGAAAGACCATATTCTTGTAGCGTGTGTAGGcaacgttttaaatatttaggtgataaaaataaacacgAAAGACGACACGAAAGCTTAGGCGGATCTGGATTTAAAAGAATAGTACTTGGTCGAAACATCAAAGCTACCAAAGCACAGGAAGATTCTTCTTGTTCTGAACACGAGCaagaaagtttaaataatACGGAATCTCAAGTTCCTGAAAGTGAATATCAAGACCAGACAGATCAACAATTTGAGGAAGAGCAAATAGTGAAGTTTGAAGAAGAACAGATAGttaaattcgaagaagaacaaatagttaaatttgaagaacaaGAAATAACGGAAGAATATGAACAAGTATATGAACagGAATATGAAGAGACATCTAGAGAGGCTTCAGATGCAGCAGAAGTTATAATGAGCATGGAAGATACTACTGTTTACACAGAAGAAGTAACTACAGATAATATCGAACCTACAGAAATTATGGCAGATGAAATGATGACAAATGAGATATTACAATCAGGTGCTGTAGTTCATTTGCAACAAGAAGATGATTCAGGGAAAATACAAGTGATTCCAGTGATGTTATCTTTACCTGATTTATCTGATGCAAATACAGAGGTCAATTTAGCTACTGCAtctattatgtataataattga
Protein Sequence: MKHTEIKNKDHNYSEVKLRNFQHATSNILNICDNDIKTVCKSNKSGIISNKEIFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKKLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIRHLEDINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHITLTDTATRNMELNKTKPVASLEKQMENIAESNVKSPSTSKENNENVPKISANIFSLKNDKVLEKSVRKVSHKESENKIEVEIFEESTILQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPNAKRRHIQQKESMKQCSQSISVSDNNSVSDDKNIDIKQTTYNYDTCLKTYVKIKDTDCNSQSTESHSIINSETIYNTESTKECSKQPNILKRRLLLQSKKESAEETDENCQSNISDKCGSHKDLKVQKLDVNNSLNSNQEDGIMYVTVKGSKPNEILLVKVKKMEKTLEKKDDKSVGKKNFDIKPMDKILKRYETFVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHTNIVALPKLEESRCFKRNENQDNQRSLTIESDSVVNVQFDKDDGELDANINSEDDISEIAESTKEKSANEKTYVNTEEYLSHLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLTRILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPADYIPEEHYLECDYCPETFASKEVLEEHLKMHDYKIMHFCEDCMEEFPTNKAKRNHNVICIKKLLCKYCDTMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEDVDGPPEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKATKAQEDSSCSEHEQESLNNTESQVPESEYQDQTDQQFEEEQIVKFEEEQIVKFEEEQIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMSMEDTTVYTEEVTTDNIEPTEIMADEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_01417867;
80% Identity: iTF_01420426; iTF_01419791;