Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: -
Assembly: GCA_010645115.1
Location: WIUU01007702.1:3942-6872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0052 0.72 11.0 0.0 2 23 30 51 29 51 0.96

2 11 0.0035 0.48 11.6 2.2 1 23 94 117 94 117 0.98

3 11 5e-06 0.00069 20.5 0.3 3 23 125 145 124 145 0.98

4 11 0.00057 0.08 14.0 5.9 2 23 152 173 151 173 0.95

5 11 1.2e-06 0.00017 22.4 0.7 1 23 179 201 179 201 0.98

6 11 0.00073 0.1 13.7 2.1 1 23 249 271 249 271 0.97

7 11 4.4e-07 6.1e-05 23.8 1.9 1 23 686 708 686 708 0.98

8 11 0.0014 0.19 12.8 2.1 1 23 715 738 715 738 0.94

9 11 7.6e-05 0.011 16.8 0.3 1 23 746 769 746 769 0.96

10 11 1.9e-05 0.0027 18.6 3.3 1 23 775 797 775 797 0.97

11 11 0.0021 0.29 12.3 5.7 1 23 803 825 803 825 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0052	0.72	11.0	0.0	2	23	30	51	29	51	0.96
2	11	0.0035	0.48	11.6	2.2	1	23	94	117	94	117	0.98
3	11	5e-06	0.00069	20.5	0.3	3	23	125	145	124	145	0.98
4	11	0.00057	0.08	14.0	5.9	2	23	152	173	151	173	0.95
5	11	1.2e-06	0.00017	22.4	0.7	1	23	179	201	179	201	0.98
6	11	0.00073	0.1	13.7	2.1	1	23	249	271	249	271	0.97
7	11	4.4e-07	6.1e-05	23.8	1.9	1	23	686	708	686	708	0.98
8	11	0.0014	0.19	12.8	2.1	1	23	715	738	715	738	0.94
9	11	7.6e-05	0.011	16.8	0.3	1	23	746	769	746	769	0.96
10	11	1.9e-05	0.0027	18.6	3.3	1	23	775	797	775	797	0.97
11	11	0.0021	0.29	12.3	5.7	1	23	803	825	803	825	0.98

Sequence Information

Coding Sequence: ATGTCTGAATATACAAGCGTGTCATTCGCTCTAAGTCCGGAAGAGAACTGTAAAAATGACACGGTCCAAATGCAGTCTATTAATCTTGTTTGTCCGGTATGCGACGCTggatacataaataaaaaagaattttatgatCACTTAAGTATACACGCTGGAGATGTTTTGTTGAAACACGTGGAGTGCCTGAAGAATGCAAATAATGAATTAGATATAGTGCCAAGAGAGTCTGTCCCAAAAAAGATTGACGACGATCTTTGTGAAACTGTATTAAGGCCCTTCAAGTGCCAGCAATGCAGTTCGACATTTGACAGAGCTTCTCAGTATGACTACCATTATCGCAGCATACATCTTGGTGAAAAATCACAGCTCTGCGAGATCTGTGGTAAAGGTTTCTTTCGCAAAGCAGACCTGAGGACACATTTAAACATTCATTTAGGAACAAATGTTTGCATCTGCGAGATCTGTGGGAGAAAGTTCAATCACATATCCAATTTAATTAGACACTGCAGAATGCACGCTGGGATAAAATTGTATCCATGTTCCATTTGCGGAAAACGTTTTACTCAGATTAGTTCCATTACAAGGCACAAACGTATTCATGAAAGAGCAAAAGATGACGTTAAACTTCATTCGCAAACTAATTCCAACAATTGTAACTTGCAGAAAAAAGATCATGCAACGTACAAAAATAAGTTTGTTGAAGGTAATGCACCCACTCAGCAAAAGATTGTTAAGAGACAACATTACTGTAAAATTTGTGgtgaaagtttcaatttcatctttctcttAAGGGAGCATGAAAAATCCCATTTGCAAATTTTGGAATGCAAAGACCATGAGGTGaattttcagaaaGCTACAGAACTGAAAGAACAAACACaacgtattaataattttgactttcttgaaaatgaaacagatATGAAAAAAGCTTTGCCATTGgatgcaattatttatatcacgtCAGAACagttgaagaagATCAATTTGGAAAACATCGAAGATAATAGAAATCACGTTTCACAAGATGATCTgtgtgaaacaaaaattttaggAGATGAAGAATTAAACGTTTCAGAGAAGATAGCATTTAACAACGAACAAACTCAACTCGTTCGTGATAATCCACTTCTATCTAATGATTccatagaaaatgaaaatgtagcATATGTTTGCCCACTGGATGagaatattcttaaaaataaattgtgcGAGACGGATTTACAAAAATCTGAAACAATATCGAATTATAACACCTTGATGAACACTCCTCTGAATGTTGctgatttgtttcaaaaaatagaTCTGTCAGAATCTAATAGTAACGAACATCTTAATTCCGACCCAAGTAtacataaaaatgaagaaacaactttagtacaaaatgaaaagatatcCGATGATTTAagcgatataaataatattgtgaaTCACGATGAACCAATGTTGCGTTTAGTACAAACAGAAACAGGGGaacaattttacgaatttctaattaacaATTTAGTTGAGAAGTTGCCGAGTTCGCAAATCGCCGAGTCCACGAAAAATTCTGAGAGCAAAGACGATAGTACAAAtatgaacgaagaaaatcacgAAGGGCAGAGTATACGAGACGACATACATaacgatttaaattattcgcaaTATGGGCTGCAAGGTGAAGTGAAAAGTTTTGCAAATCAAATTCTGTTAGACACGCAAAGCGATTTTGATAAATACgtcgaaacaaatttcgaagTATTCGAAAGATTAAATTACGACGACAGTCCCGAgcgatttctcgaatttgtTGAATCAGGACTTGAGAACCAAAGCTCGAAAATTTCAGACTACAGCAAGGAGAGTGACGAATTCTTACAGTTTCAGAATTTTACCGAAATCGATACTGTACAACCAAATGAGAAAGATAGTATTATTAACGACAATAATAGTAGCGatcaaattatcgaaataGATGAGAAACGAAAGCAGAACGAAGATGCAACTAATAGTAATGAAAAACTGGAGGACGAACAAGACTCGAAGAAGTCGAAAGCATTCTTGATAAAGTTTCAATGTACAGTGTgcgaaaaatcgttttcaaCTAGTTACAATTACAAGCAGCACATAGGTACGCATTTCGCGGACCagcagaaatttcattgtaaagaCTGTAAATTGTCCTTCGCTTGGAAGTCAACGTTAAACAAACACATTGCAAATAATCATAGACCGGATGGTCCGCAGAAGTTCGCGTGCGatatatgtaacaaaatttataatacctCCTCGCAAGTGAATGAGCACGTGAAGCGAGATCATCTGAAACAGCGGAACCATGTTTGCTCTCAGTGCGGCaagtcattttttaaaaagtacgACTTGAAAATACACAACAGAATTCATACCGACGAACGGCCGTACGTTTGTCGCGCTTGCGGGAAAAGATTTCACCACCGAAGCCATATTATTCGCCACGAGCGCATACATTTCTAG
Protein Sequence: MSEYTSVSFALSPEENCKNDTVQMQSINLVCPVCDAGYINKKEFYDHLSIHAGDVLLKHVECLKNANNELDIVPRESVPKKIDDDLCETVLRPFKCQQCSSTFDRASQYDYHYRSIHLGEKSQLCEICGKGFFRKADLRTHLNIHLGTNVCICEICGRKFNHISNLIRHCRMHAGIKLYPCSICGKRFTQISSITRHKRIHERAKDDVKLHSQTNSNNCNLQKKDHATYKNKFVEGNAPTQQKIVKRQHYCKICGESFNFIFLLREHEKSHLQILECKDHEVNFQKATELKEQTQRINNFDFLENETDMKKALPLDAIIYITSEQLKKINLENIEDNRNHVSQDDLCETKILGDEELNVSEKIAFNNEQTQLVRDNPLLSNDSIENENVAYVCPLDENILKNKLCETDLQKSETISNYNTLMNTPLNVADLFQKIDLSESNSNEHLNSDPSIHKNEETTLVQNEKISDDLSDINNIVNHDEPMLRLVQTETGEQFYEFLINNLVEKLPSSQIAESTKNSESKDDSTNMNEENHEGQSIRDDIHNDLNYSQYGLQGEVKSFANQILLDTQSDFDKYVETNFEVFERLNYDDSPERFLEFVESGLENQSSKISDYSKESDEFLQFQNFTEIDTVQPNEKDSIINDNNSSDQIIEIDEKRKQNEDATNSNEKLEDEQDSKKSKAFLIKFQCTVCEKSFSTSYNYKQHIGTHFADQQKFHCKDCKLSFAWKSTLNKHIANNHRPDGPQKFACDICNKIYNTSSQVNEHVKRDHLKQRNHVCSQCGKSFFKKYDLKIHNRIHTDERPYVCRACGKRFHHRSHIIRHERIHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417865;
90% Identity: iTF_01421072;
80% Identity: -