Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: -
Assembly: GCA_010645115.1
Location: WIUU01008901.1:4609-7813[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00022 0.03 15.4 3.9 1 23 227 249 227 249 0.98

2 11 0.011 1.5 10.0 11.8 1 23 255 277 255 277 0.96

3 11 5e-05 0.007 17.3 6.6 1 23 283 305 283 305 0.99

4 11 0.00023 0.032 15.3 2.3 1 23 311 333 311 333 0.95

5 11 1.1e-06 0.00015 22.6 1.9 1 23 339 361 339 361 0.97

6 11 2.3e-05 0.0032 18.4 1.1 1 23 367 389 367 389 0.97

7 11 6.6e-05 0.0092 17.0 1.6 1 23 394 416 394 416 0.97

8 11 2.5e-05 0.0035 18.3 0.1 1 23 422 444 422 444 0.96

9 11 0.00018 0.024 15.6 0.1 2 23 456 477 455 477 0.96

10 11 7.6e-07 0.00011 23.1 2.0 1 23 543 565 543 565 0.98

11 11 9.1e-06 0.0013 19.7 4.4 1 23 575 597 575 597 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00022	0.03	15.4	3.9	1	23	227	249	227	249	0.98
2	11	0.011	1.5	10.0	11.8	1	23	255	277	255	277	0.96
3	11	5e-05	0.007	17.3	6.6	1	23	283	305	283	305	0.99
4	11	0.00023	0.032	15.3	2.3	1	23	311	333	311	333	0.95
5	11	1.1e-06	0.00015	22.6	1.9	1	23	339	361	339	361	0.97
6	11	2.3e-05	0.0032	18.4	1.1	1	23	367	389	367	389	0.97
7	11	6.6e-05	0.0092	17.0	1.6	1	23	394	416	394	416	0.97
8	11	2.5e-05	0.0035	18.3	0.1	1	23	422	444	422	444	0.96
9	11	0.00018	0.024	15.6	0.1	2	23	456	477	455	477	0.96
10	11	7.6e-07	0.00011	23.1	2.0	1	23	543	565	543	565	0.98
11	11	9.1e-06	0.0013	19.7	4.4	1	23	575	597	575	597	0.97

Sequence Information

Coding Sequence: ATGTGCACCACGCCTGGCAACGTGGGCACAGGATTTGGGTATGCTTGGTCCTTCGGCGGACCTGGAGCAGAAACCCGAGAAAATGCACAGGGTGAACTTGCTACAAACATTAGTTATGCTGTGAATAATAATCAGGACCAAGGATCCAGTCAGAAGATACAGGTTGACATCAAACCGACTAAAGTTGCCAATAGCACGCATCGTAGGCCGATGTTCACTATGAATGAAACTTGTCAACAGACCCCAACAACCCATCATACAGCTGGAGCTCATAATCAAACGCATGGCACGCATGTACGTACTAAGAAGCATCATGATGTATTTTCATTAACGTGTGACAAGGGAGGTTGTAATTGTGACGCGGCACATGCAACACCGCCGCCATCTCTCTTTTCAAACACTTTAGTTTTTACTACAGCTGACAAACACGCCATGAGTAAGCATTTCATGACACCTATCGGACCACTACAACTTACGGCGGAAgaatgcaatgaaattttaatgaaaagagCGGCAGCTGCTTCGAACCAAGCCAATGTAAACAACGTGGCAACGAGTCAGACAGATAGCACGGCTCATTTTGGACATGTCTTAACGCATGTAAATACCGCTCAAATTGAAACGAAGGTCAAGCAACAAGATATGGGAAGTCAAGTTAGAGTACCAAAAGAAAGGCCATATTCTTGTTCGGAATGTGGAAAGTCATTCCTTTTGAAACACCACCTTACGACACATGCAAGAGTACATACGGGAGAACGACCTCATGTATGCGTTCATTGCGGCAAAAGTTTTGCACACAAACATTGTCTTCATACTCACTTGCTGCTTCATAGTGCCGATCGACCGTACCAATGCAGAGAATGTAAAAAGTCTTTTACATTGAAACATCACCTTGTAACGCACACGCGAGTACATACGAGAGATCGACCATTTGTTTGTCAAGAGTGCGGAAGATCATTCCCATTGAAACGTCACTTGGTAACGCATAGTAAATTCCATTCAGGAGAGAGACCTTTCGTTTGCGAAGAATGTGGGGAATCATTTTCTCAGAAGGACCATTTGACAATGCATTCGCGCTTCCATGGCAGTTTACATCCATTTGTTTGTCACGATTGTGGAGCGACCTTCCAGAGAAAGTTTGAATTAGTGAATCATGGTCGTTTGCACGGCAGAGTTCCACATTCGTGTACTGTTTGTGGGAAAGAATTCCTTCAAAAGAGAACACTTCTAGCGCACATGCGTTTACATACTGGAGAAACTCCATTTGCCTGTACTGTTTGTGGGGAAGCATTTCCTCGGAAAACAGACCTGGTAACCCACtcaaaaatacataacaataaTACGAATACGGATGAAAAATCCCTTATGTGCAGGGAATGTGGATTGGACTTTCCAAACAGAGAAGCTCTTACGTTACACTTAAGGTTACACTCTGGTGATCGTACTCTTGTTACGGATTTGTGTGGGTTAGCAGCTGCGTTCCAACAAACTCCTGGACATTTCCTGACGCCCAATACCCCTGGAACTCATCAGATGAATGGCCCCATCGGAAATCCCGGTGTGAGTCATATGCACGGCGCGACGCAAACATCACCACCTGTAGGAACAGGTCCGAAACCAAAACCACATGTTTGTCCCGACTGTGGTCGTGGTTTCGCGCAGAAGCATGGCTTATCTCAGCATCAAAGACGCCATACGGATGGTAGTTGCCACATAAGATCGCACGTGTGCGATAAATGTGGGAAAGCGTTCTATCAGAAGAATCATTTGTTATTACATCAACGCCAACACATGGATCCCCCTCCCAGTATACTTCGGCAACAACAGAGACAAGCTGCGCAAGCTGCTGCACAGCAAGcacaacagcagcaacagcaacagcagcagcagcagcagcaagcCCAGCAACAACAGGTACAACAACAACAagtgcagcagcagcagcaacaagtGCAACAACAAgtgcaacagcagcagcagcaacctCAACAGCAACAAACAACATGCACTGTAGATACAAAAACAATACAACTTCAAGCGATACAACAAGTGCAACAACAAGTTCAACAACAGgtacagcaacagcagcagcagcagcagcaacagcaacaacaacaacaacaacaagcgTGCTCTGTGGACACTAAAGCAATACAATTAAATGTCACTATGTGA
Protein Sequence: MCTTPGNVGTGFGYAWSFGGPGAETRENAQGELATNISYAVNNNQDQGSSQKIQVDIKPTKVANSTHRRPMFTMNETCQQTPTTHHTAGAHNQTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHATPPPSLFSNTLVFTTADKHAMSKHFMTPIGPLQLTAEECNEILMKRAAAASNQANVNNVATSQTDSTAHFGHVLTHVNTAQIETKVKQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLHTHLLLHSADRPYQCRECKKSFTLKHHLVTHTRVHTRDRPFVCQECGRSFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKTDLVTHSKIHNNNTNTDEKSLMCRECGLDFPNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTPGTHQMNGPIGNPGVSHMHGATQTSPPVGTGPKPKPHVCPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFYQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQQQQQQQAQQQQVQQQQVQQQQQQVQQQVQQQQQQPQQQQTTCTVDTKTIQLQAIQQVQQQVQQQVQQQQQQQQQQQQQQQQQACSVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131010;
90% Identity: iTF_00684308;
80% Identity: -