Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: -
Assembly: GCA_010645115.1
Location: WIUU01001964.1:19996-24162[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1e-05 0.0014 19.5 3.9 1 23 290 312 290 312 0.97

2 12 7.3e-05 0.01 16.9 3.5 1 23 316 338 316 338 0.98

3 12 0.00015 0.021 15.9 3.1 3 23 345 365 343 365 0.96

4 12 0.00021 0.029 15.4 3.5 1 23 417 439 417 439 0.98

5 12 0.00067 0.093 13.8 1.4 1 23 444 466 444 466 0.97

6 12 0.00018 0.025 15.6 3.3 1 23 515 537 515 537 0.98

7 12 1.7e-05 0.0024 18.8 0.4 2 23 545 566 544 566 0.97

8 12 8.3e-07 0.00012 23.0 2.1 1 23 576 598 576 598 0.96

9 12 0.00019 0.026 15.5 1.6 1 23 604 626 604 626 0.97

10 12 0.00013 0.019 16.0 0.7 1 23 632 654 632 654 0.98

11 12 4e-06 0.00055 20.8 2.0 1 23 660 682 660 682 0.96

12 12 7.1e-05 0.0099 16.9 0.3 1 22 688 709 688 709 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1e-05	0.0014	19.5	3.9	1	23	290	312	290	312	0.97
2	12	7.3e-05	0.01	16.9	3.5	1	23	316	338	316	338	0.98
3	12	0.00015	0.021	15.9	3.1	3	23	345	365	343	365	0.96
4	12	0.00021	0.029	15.4	3.5	1	23	417	439	417	439	0.98
5	12	0.00067	0.093	13.8	1.4	1	23	444	466	444	466	0.97
6	12	0.00018	0.025	15.6	3.3	1	23	515	537	515	537	0.98
7	12	1.7e-05	0.0024	18.8	0.4	2	23	545	566	544	566	0.97
8	12	8.3e-07	0.00012	23.0	2.1	1	23	576	598	576	598	0.96
9	12	0.00019	0.026	15.5	1.6	1	23	604	626	604	626	0.97
10	12	0.00013	0.019	16.0	0.7	1	23	632	654	632	654	0.98
11	12	4e-06	0.00055	20.8	2.0	1	23	660	682	660	682	0.96
12	12	7.1e-05	0.0099	16.9	0.3	1	22	688	709	688	709	0.96

Sequence Information

Coding Sequence: ATGacagaatattttgatttgcCGCTTAATATGGACAGAATATGCAGAATTTGCCTTACAGAGGGTACTAATTTATCTCCTATTTTTTGTACGGACCAAGaagtaaatgatttttctggcCTTTCACAAAAGATACAAGTTTGTggatcgattgaaattcatgAACAAGATGGATTGCCATCGTTAATTTGTgacatttgtatttataaagcAAGTGTTGCTCATGAATTTAGACAACAATGTCAACATTCTGATGCGAAATTAagaatgtattataataaaccaTCTAAAATTACTATTGTGGACACATATACACAAACTGAATCCGAAATAAGAacattattatcaaaaaaacaaattgatgAGAACTATTTTGTCAAAGAAGAGATGCATGTATCGTCAAATTCTCAAGAATATATACAAACTAATGATTCATATTGTAGAGATGAATCTAATTTAAGTACCAGTCATATTGATatgcaaaatgaaaaactttttatttgctCTATTGGATTTGAAGGatctaaagaaattgaaaaggaatCTTGTGTCTCAGAGAATAATATACATGAAACATCTCTGATACAAGAGAGTAATGATATTCCTGAAACTATTAATATGGAAAATAAGCCAGAAGAAAATCAAGATATCAACCAAAATCCAGAAGAAGATGATAAAAGACAAGAGGAGGAAttgtttgatgaaaatatGTTAGATGATAATGtcaaagaggaagaagaagttCTACAGAAACGTACTTCTACTAGGAAAGTCAAATCAGTGCCTAATAAAACTTATAGTGAAGATGAAGTTCatagtaattattatgattCAAGCAATGATGATCAAGATTctagagaattaaaatttaaatgcaaaGTATGCGGAAAATGTTACAACACACAAAGAGGTTTAAAAAAGCATTCTCTTgttcatgaaaaaaaacataaatgcaatatttgttcaaaaatgttttacagATTGGAAAACATGGAAAATCacaaaaaaatacatgaatCAAAACCTCTTGCTTGTCAATTGTGTCATGCATGCTTCTCCAAACCCCAAAATCTTGTACGTCATTTAAAATCTCACACagaaaaagtaaataacaTGATTAAACAAATCAGTACGGATGAACAAAAGGATAACAAGgaaccaaaaaaagaaatgaaatttgaaaatgatacTGATGATGAAAGTGGTACTGTGAATGAAGtttatgattttgaaaatgcaCCTGAATTGTACAAATGTGAAATTTGTAGTCAGTATTgttcttctttaaaaaatctgaaaagaCATACTCTTGTACATGGAGATAAGAAATATTCCTGTACTGTATGTAAAAAATGGTTCTTTAGGCCTGATACATTGAAAAAACATGCAGAAAAACATGGTCATGGTTTGTTAGACAATTTAGtagatgataataaattttttgattcTGATGATGACTTTTTCCCGAGTACTGCACAAAACACTTTAcaagagaatgaaaatgttaaaaaagaagaaagtgatGAAGATGAAGCTGGTGAATATAAATGTCAACATTGTGATAAAATCATGACGACAAAAAAAGGTCTTAGACGTCATGTATCAATGCATAAACCAAAAGCTGAACCAGTTACTTGTGAAATCTGTGGGAAGGTATGTGCTAGTCAAGCTCGCCTTGTTCTTCATCAGAGGACACATAAACCAAAAGAAAAGGTTCCTCGAGAATACCTATGTCACATTTGTAGTAAAGTGTATCCAAGTAATTCTTCTTTAACTTATCACATGAGAACTCATACTGGTATTAAACCACATGTGTGTAAAACTTGCAATAGTGGATTTACTACAACAACCAGTTTAGCAAATCATATTAGGATTCATACAGGTGATAAACCGTTTGTTTGTCATGTATGCAGTGCAGCATTTGCTGTCAGTTCAGCTTTTAGACGACATTTAACTCGACATACTGGAGAGGCAAATTATTTGTGTAAAACATGTGGTAAAGCATTTAAAAGACTAAGTACATTAAAAGAACATACTTATACTCATTCTGGAGAAAAAccatatgtatgtaaaacgTGTGGTGCTGCTTACAGTCACAGTGGTAGCTTGTTTGCACATCAGAAACGTTGTCGAGCTCAATATGGAGAAATGGTTGTAGATGATCACACAGTTGCTCATCATATTCATGTAAATAATGTGCAATCTGCAGTACGATCACTTGCTGTGATAGGacaaatgttttaa
Protein Sequence: MTEYFDLPLNMDRICRICLTEGTNLSPIFCTDQEVNDFSGLSQKIQVCGSIEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPSKITIVDTYTQTESEIRTLLSKKQIDENYFVKEEMHVSSNSQEYIQTNDSYCRDESNLSTSHIDMQNEKLFICSIGFEGSKEIEKESCVSENNIHETSLIQESNDIPETINMENKPEENQDINQNPEEDDKRQEEELFDENMLDDNVKEEEEVLQKRTSTRKVKSVPNKTYSEDEVHSNYYDSSNDDQDSRELKFKCKVCGKCYNTQRGLKKHSLVHEKKHKCNICSKMFYRLENMENHKKIHESKPLACQLCHACFSKPQNLVRHLKSHTEKVNNMIKQISTDEQKDNKEPKKEMKFENDTDDESGTVNEVYDFENAPELYKCEICSQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKFFDSDDDFFPSTAQNTLQENENVKKEESDEDEAGEYKCQHCDKIMTTKKGLRRHVSMHKPKAEPVTCEICGKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVDDHTVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00962662;
90% Identity: iTF_00223348;
80% Identity: iTF_01419777;