Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: -
Assembly: GCA_010645115.1
Location: WIUU01002888.1:3724-6697[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.039 15.0 0.4 2 23 256 277 255 277 0.95

2 11 0.0032 0.44 11.7 0.9 1 23 285 308 285 308 0.95

3 11 0.00014 0.02 15.9 2.3 1 23 364 386 364 386 0.98

4 11 1.6e-06 0.00022 22.1 1.5 2 23 436 457 435 457 0.97

5 11 1.4e-05 0.002 19.1 0.8 1 23 462 485 462 485 0.96

6 11 4e-06 0.00055 20.8 0.3 1 23 520 542 520 542 0.98

7 11 6.7e-07 9.3e-05 23.3 0.9 1 23 552 574 552 574 0.96

8 11 1.9e-06 0.00026 21.8 1.2 1 23 580 602 580 602 0.99

9 11 9.5e-06 0.0013 19.6 0.2 1 23 608 630 608 630 0.98

10 11 7.2e-05 0.01 16.9 4.6 1 23 636 658 636 658 0.98

11 11 0.00028 0.04 15.0 0.4 1 21 664 684 664 685 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.039	15.0	0.4	2	23	256	277	255	277	0.95
2	11	0.0032	0.44	11.7	0.9	1	23	285	308	285	308	0.95
3	11	0.00014	0.02	15.9	2.3	1	23	364	386	364	386	0.98
4	11	1.6e-06	0.00022	22.1	1.5	2	23	436	457	435	457	0.97
5	11	1.4e-05	0.002	19.1	0.8	1	23	462	485	462	485	0.96
6	11	4e-06	0.00055	20.8	0.3	1	23	520	542	520	542	0.98
7	11	6.7e-07	9.3e-05	23.3	0.9	1	23	552	574	552	574	0.96
8	11	1.9e-06	0.00026	21.8	1.2	1	23	580	602	580	602	0.99
9	11	9.5e-06	0.0013	19.6	0.2	1	23	608	630	608	630	0.98
10	11	7.2e-05	0.01	16.9	4.6	1	23	636	658	636	658	0.98
11	11	0.00028	0.04	15.0	0.4	1	21	664	684	664	685	0.94

Sequence Information

Coding Sequence: ATggaagttttaaaaaatgagcAACTAGTTGATACGTATGAGAAAATTTATGGAGATGAATGCCGAATCTGTTTGAGAAGAGCTGTTGAAATTTGTGAACTTTTTAGAAATGGGGACACTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGGTTGAAGAAGGAGATGGTTTACCACCAGTGATCTGTTTGCCTTGTAATCAGCGTTTAGATGCATCATATGattttaaatgtcaaatacaaaattcagATGAAAAACTTCGTCAAATTCTAAAGCTGAAATCATCTTCCAATAATTCTGTTACCAGCGCCAGTATAGTTACAGCAATAATTGCTGATGTGATATCTAGTGTAATAtcttctgaaaaagaaaatacagaaaagCAAGAAGTTTGTTCTACAAATTTTTGTcctgataatttttgtttcacgaaagATGGAACTTCTTTTTGTCTCAAttcagagaaaaatttattttgttatgaAAAAGAATCACAGAgtgaattaaatgatatagAACAAAGAAAGAACCTAGAAGATGCAAATgtttataaaagtttattagAGGATGATTCTGTAAGACAAATCAGTTCAATGAAACAAGACTATACTTTATTGGATGATCATATAATACAAACtaaagatatttcattaaaggaagaagaaagtatTGAAGAAAATCAACAAATAGAAGAGACATCAAAGATAGATAATATTCAAGATGATGAAGAAAAACCATTAATTTCACGCACAACTAGATTACGTTGTACACAGTGCATTAAGTCTTTTCGTACAAAAGTGGCCTTGCAGAGACATGCCATTGTACATAAACGTAAAACTAAATTACGCTACGTTTGTTATGTTTGTGATAAACAATATTCTACCCttgcaaaagtaaaaaatcaTGTTGCAATTTGTCATGAACCTCatgatagaaaagaaaatattcaacataaaagaattaattatgaacAAAATAAAGCAATAACGAGTGTACAAGATAAAAGAATTAGTAATGTTCAAgataagaaaataaaaattcaaaaaactGACGATTCTTCTAAAGAACAACGAAAAAGCCTAAAATTTACCTGTGAAGTTTGTTCAAAGCAATTTACATATCAAAAATCCTTTATCACACATGCTAAAAGTCATCCAGAGTATAAGTTTGAAGAATTGGACGATTCTTCCGAATGTTCAACAAAAGAAAGATCTACAGAAActattgaagaagaagaagaaaacgaagaagaggaagaggaagaggatgAGGAAGATGAGAATCTTCCAGCTGAAAGTTTACAATGCACTCAATgtggaaaattatttgcaacaaAGAGAAATCTTAAGAGGCATGTTTCTACACATAGTGGATTAAAGTATACATGTGAAACGTGTGGTAAAGGATTTTCAAGAGtggataaattaaaagatcaTGAACAGTCAAAACATAAGgctgaattatttgaaaattctgacTTGGACGATAAAGAAGATATGGACAATAAAGGAGACTGtttagaaggaaaaaagaaagaTCGTCACAACAGACCTCATAAATGTGCAATTTGCCCTAAATCATTTGCACAAGCTCAATCACTAGCGAATCACATAGAACGTCATAAACGGGTGAAAGAAACTCAAAAAAGATTTCTTTGTGAAGTCTGCAGTAAATGTTTTGCACAGAGTGGTTCTTTGGTTGCTCATATGCGTACACATACTGGAGTTAAACCATACGTTTGTAACGTGTGTAGTAGGGCTTTTACAAAGAGCacttatttacaattacatttgCGCACTCATAGCGGAGAAAAACCTTATATTTGTCAGTATTGTAGCAGGGCCTTTGCGCGTGCTAATACATTAGCAAGGCACATAACAATGCATACAGGAGAAGCGAAATATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACTTCGTTAAATGAACACACTTACACACACACTGGACAAAGACCATATGCgtgtaaaatttgtacaaagaGATATAACAATGCTGGATCACTTTATGCACATAGAAAGAAGTGCAAGGCACAGCAGTTATCTAATCCTGGATTTGCAGTTTCTGTGGAAAATACTGTATCACAACAAGAAGTAGATGTTCCGCAGGTTTTGATTTATTCACACAGGAAACTAGTAGAGGATGCAACTGTCGGGCAAGTTACGCCCACGCCACAGTATATGATCGCAAACGTACATAATCAAAAGAATTTGGgatcaaatattatacagtCATTTCCAGTGGATGACCCAAATGTTTATACAAAGCCATTTAAGAACCcctattatacaatttatccaaatatgtaa
Protein Sequence: MEVLKNEQLVDTYEKIYGDECRICLRRAVEICELFRNGDTIPRKLMAVASVQVEEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNNSVTSASIVTAIIADVISSVISSEKENTEKQEVCSTNFCPDNFCFTKDGTSFCLNSEKNLFCYEKESQSELNDIEQRKNLEDANVYKSLLEDDSVRQISSMKQDYTLLDDHIIQTKDISLKEEESIEENQQIEETSKIDNIQDDEEKPLISRTTRLRCTQCIKSFRTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHEPHDRKENIQHKRINYEQNKAITSVQDKRISNVQDKKIKIQKTDDSSKEQRKSLKFTCEVCSKQFTYQKSFITHAKSHPEYKFEELDDSSECSTKERSTETIEEEEENEEEEEEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFENSDLDDKEDMDNKGDCLEGKKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVENTVSQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMIANVHNQKNLGSNIIQSFPVDDPNVYTKPFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: iTF_01421061;