Tang012804.1
Basic Information
- Insect
- Tetragonisca angustula
- Gene Symbol
- -
- Assembly
- GCA_036937485.2
- Location
- JAWNGG010000129.1:346825-349937[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0013 0.13 13.2 3.4 2 23 93 114 92 114 0.97 2 9 1.9e-05 0.0019 19.0 1.1 1 23 116 139 116 139 0.95 3 9 0.0012 0.12 13.4 0.9 1 23 144 167 144 167 0.96 4 9 0.00014 0.013 16.3 2.2 1 23 173 196 173 196 0.95 5 9 0.00051 0.049 14.5 2.0 2 23 203 225 202 225 0.95 6 9 0.0019 0.18 12.8 0.3 1 23 230 252 230 252 0.96 7 9 0.0003 0.029 15.3 0.5 3 23 260 279 259 279 0.98 8 9 2.4e-06 0.00023 21.8 0.1 1 23 285 307 285 307 0.97 9 9 0.00023 0.022 15.6 0.4 1 23 313 335 313 335 0.97
Sequence Information
- Coding Sequence
- ATGGGATTACCCGGGGGTCCAGTGCAGTACTACGCTATCTTGCAGGCTGCGACTCCGTTACTGCGATCGTTTAGAAGAGCGAGAAGACTCTTGGACCCTCTCAGCGAGCTGAAGGTCGAAGAGTTGCAGCTGGATCTCCCCGAGGAGTACGAGAGCTGGATCGGCAAGGAGAACTTCCAGATCGTGCCGATCGTGAAAGAGGAAACAGAAGCGGAGTCCTTTCGCAACAGTCGCGACCAACAGTCGCCGAGAAAGAAGAGCGTAGCCGGTCACCTGGAGTGCGACCACTGTCGACGAAAGTTCCTGAAGAAGAGCAACTTGGCCGAGCATTTGAAGAAACACAGGCACAGGTGCCCCGACTGTCCGAAGACGTTCAGGCTTCGCCGATACCTGGCCTCCCACGTCGAGAAGATCCATCGGCGTCAGGTGTACGACTGCAGCGTTTGCGAGTACAAGAGCAACAACAAAGGCACGCTGAAGAACCACTACATTCGCCTGCACACGACCAGCTACAACTTCGCCTGCGACACGTGCGGCAAACAGTTCAAGATCAAGAAAGCGCTCAACCATCACGTGAAGCAGAATCACAGCGACGCGCCGCCGATAGTGTGCGACGTTTGCGGCCATTTCAGCAAGAATCTTCACGCGCTGAAGGCTCACATGAAGTACAGGCACTACAAGCCGGAGTTCGTGTGCCGGATCTGCCGGAGAGGGATGACCACTCAGGAGAATCTCGAGCAACATCTGACCTGGCACGAGACCAGGGAGAAGGTGCTGTGCCCTACCTGCGGCAAGAGGTTCCGCGGCCGGGACCTGGACTCTCACATGCGAGTGCACACGGGTGTGAAGCCGTTCCCGTGTCCCGTTTGCGGCAAGTCGTTCAGGAGGCAGACCGCCCAGGAGCAGCACGTTCTCATACACACGGGCAAGAGGCCGTACGTTTGCGACATTTGCGGCCAGGCTTTCGCGCAGAAGCCTGGACTGATTTGCCACAGGAAGCGTCATCCTGGACCGCTGCCGCCGTTGCCTGTCGTTTCCATCAAGAACATCGTCACCGAGTTCACCAAGGAGTACGCCATGAGGAACACGATTATCAAAATCGAATGA
- Protein Sequence
- MGLPGGPVQYYAILQAATPLLRSFRRARRLLDPLSELKVEELQLDLPEEYESWIGKENFQIVPIVKEETEAESFRNSRDQQSPRKKSVAGHLECDHCRRKFLKKSNLAEHLKKHRHRCPDCPKTFRLRRYLASHVEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYAMRNTIIKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360409;
- 90% Identity
- -
- 80% Identity
- -