Tang004530.1
Basic Information
- Insect
- Tetragonisca angustula
- Gene Symbol
- -
- Assembly
- GCA_036937485.2
- Location
- JAWNGG010000034.1:769484-772133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.061 5.9 8.0 5.3 1 23 208 230 208 230 0.93 2 12 0.0034 0.33 11.9 0.4 1 23 237 260 237 260 0.91 3 12 0.00067 0.065 14.2 3.1 1 23 266 288 266 288 0.97 4 12 6e-05 0.0058 17.4 2.3 1 23 294 316 294 316 0.99 5 12 1.9e-06 0.00018 22.2 2.2 1 23 322 344 322 344 0.98 6 12 0.018 1.7 9.7 0.1 1 23 357 380 357 380 0.93 7 12 0.00017 0.016 16.1 3.3 1 23 396 419 396 419 0.96 8 12 6.8e-05 0.0066 17.3 0.5 1 23 427 450 427 450 0.98 9 12 0.00044 0.043 14.7 0.7 1 23 456 478 456 478 0.97 10 12 0.00034 0.033 15.1 5.2 1 23 484 506 484 506 0.98 11 12 2.8e-06 0.00027 21.6 1.5 1 23 512 535 512 535 0.98 12 12 0.00053 0.052 14.5 0.9 2 23 541 562 541 562 0.97
Sequence Information
- Coding Sequence
- ATGGATACTTCGAAAGATGCATTAATATGTCGTTTATGTGGTGTAAATCTTACAGAAGGAAAGCATAAAAGTATCTTTGAAGGTTCAACagatttaatacataaaataaaggaaacaTTACCCATAACAataTCTATTGATGATAGTGGCTCAAATAATTTACTTGATTGTGATTATGATTCTACAGATCCATTAGTGAAAAATGAACCTGAAAGTGATAATACTTATTGGATAGATAGTGAGACTGATTACAAAAGTGAGAAAGATACATGTGTAACTAAATCGCAAGCCATGTTTGAAAAAGATGATATACAAgatgaaaatgatatatataaatcttgtttaaaACTAAATGGGcatcaaaaaaattataaacattctGGTGTGAAACAAATACAAGTTGGTACTAGTGAAGATACTATCAGTGAAGATATCATACAAAAAGCTATAGCAACAACAAAACAGGAAAAAGTATCTGTAAATTGTAATCTTTGTGGCAAATTGATCTCAGATTTAGATCCGGATGCTATTAATGACTTAGTTACATGTGTTACTTGTGAAGATTCTACACTTTCTTTGATGATAGATGGAAATGAGACAAAAGTCATTTCGCCGCGTCAATATCATTGTTCTAAATGTCCTAAACATTtcgtaagaaaagaaagattagaatttcatgaaatgagacataatgaaaatatgaatgaatTTATCTGTAGCACTTGTGGAAAAGAATTTAGAGcagaaaattctttatatGAACATTATCTTTTTGTTCATAAAGGAGCAAGACCTCATATTTGTGAACTATGTGGCAAGTCATTTCAGTTGAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGAGAAAGGCCGTATCAATGTGATATCTGTGGTCAACGATGTAGAACTACAAATGCTTTAAAACTTCacagaaaaattcatttttcttataatagatatacttgtaatatatgtaataaatcatTTAGTAAAAAGCAGAATATGAATGAACATTTAGAAAAGCATtggaaaaatgataaaagtgtAACATTACCACAATTATTTACATGTCCAATTTGTATAGAAGATTTTCCAACATATCGCatgttaaaatatcatatgGTAGAAGatcatgaaataaataatcaggATCCAATTCTAACAAAACAAAAACCATGGTACGAATGTGCAGAATGTcatgagaaatttaaacatcAGATGTCTTTAAAAGCACATAAAGAGAGAATACATGAAGGAAGAGTAAATCCTACTTATCAATGTGACATATGCAATGCTACATATAGAGTAAAACAACTTTTAGTAAATCACATTAAAAGTAAACATAATGGTGAAAGACGTTATAAATGTGCACAGTGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTATTACACACTGGAAAAAAACCATTTGTCTGTGAATATTGTAACATGAGTTTTAGAAGAAAAGATTCCCGAGATCATCATCGCAGAAAACATACTGGTGAACAACCTTATCAATGTCCGGATTGTGGGGAATCCTTTTCTACTTACAATAATCGATCTAAACATCGAAAAAGAGAACATGGAGAAGGAGATCCTGAATGCCCAGAGTGTggagaaaaatgtaacaatcaacaagaaattagaatacatttaaataaacatttgggagaaaaattaaaaaaattacaaaatgtagAATCTGAgaagatataa
- Protein Sequence
- MDTSKDALICRLCGVNLTEGKHKSIFEGSTDLIHKIKETLPITISIDDSGSNNLLDCDYDSTDPLVKNEPESDNTYWIDSETDYKSEKDTCVTKSQAMFEKDDIQDENDIYKSCLKLNGHQKNYKHSGVKQIQVGTSEDTISEDIIQKAIATTKQEKVSVNCNLCGKLISDLDPDAINDLVTCVTCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKEFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSYNRYTCNICNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICIEDFPTYRMLKYHMVEDHEINNQDPILTKQKPWYECAECHEKFKHQMSLKAHKERIHEGRVNPTYQCDICNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPECGEKCNNQQEIRIHLNKHLGEKLKKLQNVESEKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -