Tflu026069.2
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578244.1:2398327-2406601[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4 3.1e+02 2.8 0.2 3 11 326 334 324 339 0.87 2 12 0.0031 0.24 12.6 0.6 1 19 345 363 345 366 0.95 3 12 0.18 14 7.1 0.1 3 20 444 461 442 463 0.91 4 12 0.84 65 5.0 0.1 3 23 470 491 468 491 0.91 5 12 0.52 41 5.6 1.8 3 23 770 790 768 790 0.94 6 12 0.00024 0.018 16.1 0.8 1 23 795 817 795 817 0.98 7 12 8.1 6.3e+02 1.9 6.5 3 23 909 929 908 929 0.94 8 12 0.033 2.6 9.4 1.8 2 23 945 966 944 966 0.96 9 12 2.2e-07 1.7e-05 25.7 2.9 1 23 972 994 972 994 0.98 10 12 0.0035 0.27 12.4 0.1 2 23 1000 1021 999 1021 0.96 11 12 0.022 1.7 10.0 0.3 2 23 1028 1052 1027 1052 0.93 12 12 9.7e-05 0.0075 17.4 0.2 3 23 1091 1112 1090 1112 0.96
Sequence Information
- Coding Sequence
- atgtCGGAGAATAGTAAAAAAAGGTGTCGAAAATCCAAATTGGTGCCGCGCACTTATGATTTGGACGATGGTAAAGTCGAGGACGATGACGCGAGCCCGAACGTAAAGGAAATATCATCGAAATTACTGAAGATAAAACAAGAAATTGAAAATGACGACTGTATTTCCATACAAGATACCATCTcttctccattacaaaattatgtGGCTAATcctttacaaaattatatgacTTCACAAAACTACATTCCATCTCCCATACAATTCTCTATCAAAGTGGAGGTTGAAGAATGTGATGACCTGGACTTTGGAATAATAAAGAAAGAGATCACTGAACAAGAAACCTTGGCTAAGACAGAAACATTAGAGACCCGGGTTTCTGTGCCGTCTATATCAGATATTGATATCAGTAAAGAAGCTGATAATCTACTACTGAAAACAGagaatattgatttaaatcCAAATTTTTCAGAATGTATAAATTCTCCATTAGAATTGGAACCCATTGATATGGGTCAAGATGCAATTATTGATGGTCAGGACTTAATTATTGATATTGCTAAAGAAGAAAGGTTAAATGGTGggaaatatattgtattgtcCGAAGaggatattttaaattatcaacCGGACCCTGAAGATGTACCAGGCAAATTGTTATGTATAGAAATCAGGAATATAATGGGACGGGTAAGGAAAGACAGTTTGGAGATGGACCGCCATGAGAAATTAATACAAGTAACTTTAGAACAGAACAAACTGGGTTTGAATCAGTTCAATGATgttatatttacttacaaatgTTATATTTGTAAAGAAGCCTGGTGGCACCTGTACCCATTCCGGGAGCATATAAGGAAACATGATGATGCAAATTTGGTGGTAAGCATGGAATTCAGTCGAGGGCAAGAAATTAATATGATAGCATTTACGGGAACGGTACCGAAGAATACGGATATAGAAATACACTCTAATTGTTGGCATTGTGGTAAAAACTATAGTATTCATAAACAGATTGAAAGCAGTATACGGTTCACATGTTCATATTGTACGGAAACATTTGTTACATGCACTCAACTGATCATGCATGAAGGAGTTTGTTTCTGGCATATGCACAAGATGCTCGAGGACGATTCACAGTCCCATATATGTCCTTACTGTCTAATTGTAGTTTTCTGTAACACTGAATTGAATGATCATTTGATTTTACGTCACTCGGTAAGGTCTGACGTTCCAATGCCAGTTACATTTAAACACTGTCCGTATTGCagaggaatatattttaattttaactcgCATGTTTGTCCAAAGCGGACAGGAAATAAAGCTTGTTTATATTGCAATAGAAAGTTTCCTAATAAAGTACTGTGGGATGCACATTTATTGTTGACGAAAAATGATGTTAATTGTCCTATTTGCGGTATTGTTTTGGCAAAGGAATGTATGATGTCGAGCCATATATTGGAGGAACATAGCACTGATTTCACAGTGTGTACAAAATGTTCTTTGTGTGTAGATTTCTTGGTCTTCATAGATGATGTGGCTCAGAGGGAGCATAGACTTGTCCATCATAAGCTAAGGTATGACCGAAGGCGAAGTATTTTTGAAATGGTGGTGATAccgaaaattttattattaaatccaCTTGAAGCACCCCCTCGACCGAAAATATCAAGAAAAATATTGGTAGACCTAAGTTGTGCACCGAAAAAGAAAAGGAAACCCAATTTTAAGGTATTACTGGAAGCGTGTGGAACCAATGCTTTTCTGAAAGCAAAAATGGACATGAACAAcgaaatagaaaataatgtgGAAGTAGAAAATAATGTAGTCATTAAAACTGAACAAATAGAAGCAGCGGATAATGAACATCCAGATTATGAAAGTATAATTCAAATTAATCAGATAGGAAAGATCAAGAATACAGAACAAGATGAAATCAAACCAGAAGATTACATTAATGTGTCTGATATAAAAACAGAGGTGGAAGACATTGATTGTGTTGAAGGAAAAACAACTGATTATGAGCAATTGCTGTCAAACGTATTTAGAGTATCAGAAAATTTCACAAACATGAGAAACGAAGTCAAAAGCGAACCACTAGAAGAGAATGATGATAATATAGAAATAGCTGATGAAAAATTATACCTTGAACCAGAAGTGATACTAAAACCTGGTTACCGGAAGCGTAAAATATACACCTGCTGCAGATGTGGCTATAAGGGCTACCATAAAGAATatagaatacatttaaaaaataaatgtgaaactgTGAAAGTAATTGAACAAAAGAATGGTAAATTTGGTTGTacgaaatgtaataaaaattttgaCAGTATGAAGAGATATTTGGATCATTTATCGCAACACGGTTATAAATGTTACACGTGTCCTGAATGCTCAGAGCATTTTGAAACTCTTTCGTCATTGACAGGTCACGTCAATTATCATGTCAGAAAGAGTTATGTCAAATTATTGATCATAAATCGTTCAAGTAGAAATACAAAAGTGTTGCAGTGTAAAAAGTGTAAAGGCAAAGTGGTGTTGGATAACTTCTTTGCACATTGGGAGTCGCATTTGGAACTAGGTCATGTTCATTATGAAGATGAGATGGAGAAATATGAAGACACTGTTTCTACTGCGCTGGAACCTGAAGTCCTGAAGGAACTTATCAAACTATTAGTCTTTTACGAACGTGGTCACCGTATGAAAATTGTGAAGAACTGTAATGTATGTCACAGACATTTTGATAGAGTGAACGATTGTAAGAGACATCTTATAGAGCATTTGCTGGTCGATGCTTACGCCAACAAGCCGAGGAATAAAATGCTGAAGTGCCAAATATGCTGTGAGGGGTTCCGGAAGGCAGATGGATACAAACAACACATGCGTGACCACGGGTCCCTGCCAGTCTACAGGTGTGAGATATGCAACAAGACATTCAGTGATTCCAGCAATTTTACTAAACACAAGAAAATTCACAATCTACGTGTACTTGTTTGCGATATATGCGGAAAGAAGTTTCAGGCGAAACTTTCTATTGAGAAACATATGGCGATGCACCTAACAACCGACCCAATAATGTGTAAGGAATGTCCAAAAGGAAAAATGTTCTATGCTGAATCTGCATTAAAGAAACATATACGGAACTATCACGACAAAACAAAGCTTAAATACAGATGCTGCGTGTGCGCAAAAAGGTTCTTATGCTTAAAAGACAAATGGGACCACATGTGGTTAGTGCATAAGGAGAGGAAAGAGAAAGCCGACTGTCCAATATGTGACAAATCATTTAGGAAATACAACGATGTAAAAGCACACGTAAGAAATGCACATGAAATGGGTGTTACTGTGTTTAATATGAAACTGTTTGATACGGCCACGAAGAGACAAATGGCTGAAGCGTTACAGAAATCGTTGTTGGGTgttaagaaagaaaataatgctATGGAGGATGAAACATTGATTGTTTTTGAATAG
- Protein Sequence
- MSENSKKRCRKSKLVPRTYDLDDGKVEDDDASPNVKEISSKLLKIKQEIENDDCISIQDTISSPLQNYVANPLQNYMTSQNYIPSPIQFSIKVEVEECDDLDFGIIKKEITEQETLAKTETLETRVSVPSISDIDISKEADNLLLKTENIDLNPNFSECINSPLELEPIDMGQDAIIDGQDLIIDIAKEERLNGGKYIVLSEEDILNYQPDPEDVPGKLLCIEIRNIMGRVRKDSLEMDRHEKLIQVTLEQNKLGLNQFNDVIFTYKCYICKEAWWHLYPFREHIRKHDDANLVVSMEFSRGQEINMIAFTGTVPKNTDIEIHSNCWHCGKNYSIHKQIESSIRFTCSYCTETFVTCTQLIMHEGVCFWHMHKMLEDDSQSHICPYCLIVVFCNTELNDHLILRHSVRSDVPMPVTFKHCPYCRGIYFNFNSHVCPKRTGNKACLYCNRKFPNKVLWDAHLLLTKNDVNCPICGIVLAKECMMSSHILEEHSTDFTVCTKCSLCVDFLVFIDDVAQREHRLVHHKLRYDRRRSIFEMVVIPKILLLNPLEAPPRPKISRKILVDLSCAPKKKRKPNFKVLLEACGTNAFLKAKMDMNNEIENNVEVENNVVIKTEQIEAADNEHPDYESIIQINQIGKIKNTEQDEIKPEDYINVSDIKTEVEDIDCVEGKTTDYEQLLSNVFRVSENFTNMRNEVKSEPLEENDDNIEIADEKLYLEPEVILKPGYRKRKIYTCCRCGYKGYHKEYRIHLKNKCETVKVIEQKNGKFGCTKCNKNFDSMKRYLDHLSQHGYKCYTCPECSEHFETLSSLTGHVNYHVRKSYVKLLIINRSSRNTKVLQCKKCKGKVVLDNFFAHWESHLELGHVHYEDEMEKYEDTVSTALEPEVLKELIKLLVFYERGHRMKIVKNCNVCHRHFDRVNDCKRHLIEHLLVDAYANKPRNKMLKCQICCEGFRKADGYKQHMRDHGSLPVYRCEICNKTFSDSSNFTKHKKIHNLRVLVCDICGKKFQAKLSIEKHMAMHLTTDPIMCKECPKGKMFYAESALKKHIRNYHDKTKLKYRCCVCAKRFLCLKDKWDHMWLVHKERKEKADCPICDKSFRKYNDVKAHVRNAHEMGVTVFNMKLFDTATKRQMAEALQKSLLGVKKENNAMEDETLIVFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -