Tflu024105.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578240.1:6592508-6598115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0016 0.13 13.5 0.5 2 23 214 235 213 235 0.97 2 12 2.5e-06 0.00019 22.4 1.4 3 23 243 263 241 263 0.98 3 12 9 6.9e+02 1.7 1.9 1 10 274 283 274 296 0.75 4 12 0.38 29 6.1 6.0 1 23 560 582 560 582 0.98 5 12 0.006 0.46 11.7 0.5 2 23 588 610 587 610 0.96 6 12 0.00014 0.011 16.9 2.1 2 23 619 640 618 640 0.96 7 12 0.00074 0.057 14.6 3.7 3 23 645 665 644 665 0.97 8 12 0.3 23 6.4 1.6 2 23 679 701 678 701 0.96 9 12 0.0022 0.17 13.1 0.9 3 23 709 729 707 729 0.97 10 12 0.034 2.6 9.4 1.7 3 23 737 757 736 757 0.97 11 12 0.00025 0.019 16.1 2.1 1 23 763 786 763 786 0.97 12 12 0.00014 0.011 16.8 2.3 1 23 790 813 790 813 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAGATATTTCGGACGCTTCAATTTTCGTCAAAAAGTATTCCAATACCAGTAAAATTCGTGAGGGACTTAATGCAAAATCTACGGATGCAAAAGAGCCTAATATAGTAACTAGGGAACCTTTATCAACAAAGTATGCGGTTGAGTTTCTATTAGCGGGAACACTTCGATCTAAAGTTTGTCGATATTGCTTGAATATTTCACCTTGGCTCTCTGAATTGGatcaaatatttcaaatagCTGGGAAGGGAGCACTCTATAAAGTCACAATAAGAGATATGATTGCAAGTTTTCATCCTATCAAGgTTATTGATGATCCAAATTTTCCCAACAAAATATGTAACAAATGCTTAAACCGAGCTATTAGTTCATACTTATTCACACAGCAGTGTGAACAATCTGAACGTGCTATACGCAATTgctttgaagatatttttgaaaaactaGAAAAACTTGACCCTTTGGAGCGTACTAAGAAACGAGGCCGTCAGAAATTGCACCCAAATCACAATGTTTTGTATGTTGAACATGATGAGGTTCTAGATTATGCTGaacctataataaatattataaatactgcATCAGAATGCTTCGTCCAAGATGAAGATTCTACTGCTACTGTAACAAACGAATTAGAATGCAAAAAATGTTGGAAGACTTTACCAAACTTACAGTCCCTAATGAATCATGAACGTAGCCACCCGAAAACTATGTGGTATGGTTGCAAACAGTGTGGCAAATCATTTGCCAAATACAACCAATTGAAAAAGCATATAAATACACATCTTGATCAGCAACCTGTGCCCGTTCCCAAATTTAAATGCAATACATGTGGACATAAGAGTGATTTTTATAATCTTCACTTACAACATTTAGAAAACCACAAGTTTAAGACTGTTATAAAGCACTTAGTTGAGAGGAAGATGAATTTGTTGTGTACAATTTGTTTGAATAAGGATGCCCATATGACTGAGTTGGATAAGTTGGTATGCATCCATGGTGGATACCCTGAACTGACTGGTgataaaactttgtacagcataTTGGGATCTACATTACCTGATATGAACACGCTATATAACTACACTGGGTCAAAAATATGCGAAAAGTGCCTCAATCATGCGATCACTTCTTATGTTTtcataaataggtactattatatAAGAAATAGATTAAACACCTGTGTTAGTGCTATGTTAGAAAGCTTGAATAACTCCGTACCAACGGAAGCAAgtatgtttattgaaataagtCAAAGCCTCATATATCCATTGAACCAATTACTTGACGATAATCAGTTGCTAGACGAAAATGATTTTATAGatgatgaaaatattaaaattgatgtCTTAGAAGATGAATTTAGAATTGAATCTGAAAGTGAAGAGGAGGCAAAAGTAGAATTGGATGAACATAAAACTGAGCAAATTAAAGATGAAGGTATTGAGTATAAAAACGATACAGTTGTTGATAAAACAAGTTatttagatgatgatgatgagataCTAACCAATAATCTAGCGAGAAATGCAAAAAAGACTTACATGaaaagtaaattagttaatggTTACCAATCGATCAATAATGATTTTGATATCGCTAGTAACATCTGTAGTGAATTCTTAACGTTCAATAAAGATAGGAAACCTAATAAACCAATACGAAAATGCAAATTTACGTGCCCTTTATGTTGTAAACATTTCATATCAGATTATTTCTTGAAGAAACATGTTTTGAAACACGTAAACAAGAAAGTTGTTTGTACTGTATGTACAAATGTTTTTAagtcaagattttatttatatgaacaCACAAAAATGGTACATTTATTGAAGAATAGCACTTATATATCATGTAAAACTTGTGGTCGGACATTTAtagatgaaaataaattgttaaaacatataaaacatCATAAAGTGAAGAATTGTCAGCTGTGTGATAAAACATTTAATTCCCAGAGACATTATGATAGTCATATACAAAGGCACTCTGTTAAACTGAGGATTCTAAAAGAGAGACAAGCACAAACTTGCAGTTTCTGCGAAAGGGAGTGTTCAAACGATAATGAACTATCTTTACACGTCAATAAAGTACATTTACAAATTAAACCGTACGGTTGCGATATGTgtgaaaaacaatattatactgaatataatttaaatagtcatAAAAAGTTACATAGTCTACATAAGAGAGAAATTTGccaattttgcaataaaaatatgaaatctagGAAACAATTAGTGATTCATGTCAGAAAACATATTGGAGTGAAGCCATTTAGTTGTCAAATTTGTGGTCAATCATTCTATTCccaaatgaaaacaaaacaacacatGAAAGTATACCATGGCGGTTGTTTTTGTTGTAAAGTTTGTAAAACAGTTTTCGTAACTAAATATGGACTCAAAGATCATGTGAAGATGGTTCATAGTTATATATAA
- Protein Sequence
- MEEDISDASIFVKKYSNTSKIREGLNAKSTDAKEPNIVTREPLSTKYAVEFLLAGTLRSKVCRYCLNISPWLSELDQIFQIAGKGALYKVTIRDMIASFHPIKVIDDPNFPNKICNKCLNRAISSYLFTQQCEQSERAIRNCFEDIFEKLEKLDPLERTKKRGRQKLHPNHNVLYVEHDEVLDYAEPIINIINTASECFVQDEDSTATVTNELECKKCWKTLPNLQSLMNHERSHPKTMWYGCKQCGKSFAKYNQLKKHINTHLDQQPVPVPKFKCNTCGHKSDFYNLHLQHLENHKFKTVIKHLVERKMNLLCTICLNKDAHMTELDKLVCIHGGYPELTGDKTLYSILGSTLPDMNTLYNYTGSKICEKCLNHAITSYVFINRYYYIRNRLNTCVSAMLESLNNSVPTEASMFIEISQSLIYPLNQLLDDNQLLDENDFIDDENIKIDVLEDEFRIESESEEEAKVELDEHKTEQIKDEGIEYKNDTVVDKTSYLDDDDEILTNNLARNAKKTYMKSKLVNGYQSINNDFDIASNICSEFLTFNKDRKPNKPIRKCKFTCPLCCKHFISDYFLKKHVLKHVNKKVVCTVCTNVFKSRFYLYEHTKMVHLLKNSTYISCKTCGRTFIDENKLLKHIKHHKVKNCQLCDKTFNSQRHYDSHIQRHSVKLRILKERQAQTCSFCERECSNDNELSLHVNKVHLQIKPYGCDMCEKQYYTEYNLNSHKKLHSLHKREICQFCNKNMKSRKQLVIHVRKHIGVKPFSCQICGQSFYSQMKTKQHMKVYHGGCFCCKVCKTVFVTKYGLKDHVKMVHSYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007453;
- 90% Identity
- -
- 80% Identity
- -