Tflu010625.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578221.1:3951958-3956942[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1e-05 0.00078 20.4 0.4 2 23 170 191 169 191 0.95 2 10 2.6 2e+02 3.4 0.6 2 23 196 217 195 217 0.90 3 10 0.1 7.9 7.8 3.3 2 23 224 246 223 246 0.94 4 10 0.00052 0.04 15.1 0.4 3 20 255 272 253 276 0.93 5 10 3.6e-05 0.0028 18.7 2.0 1 23 281 303 281 303 0.98 6 10 0.047 3.7 8.9 0.5 1 23 309 332 309 332 0.95 7 10 0.3 23 6.4 2.1 2 21 338 357 337 358 0.89 8 10 3.2e-05 0.0024 18.9 0.2 1 23 390 412 390 412 0.98 9 10 0.0057 0.44 11.8 2.4 2 23 419 440 418 440 0.97 10 10 3.9e-08 3e-06 28.0 1.4 1 23 446 468 446 468 0.99
Sequence Information
- Coding Sequence
- ATGGAAATGTGCAGAGCTTGTTTATCAACAAAAGAAAAGCTGGTCCCTCTGGATGAAACTTTCATCACAAGTTATAACTTACTCACAAATCTCAATATTTCAACCCTGGATAACATGCCTCAATATTCATGTGAAAATTGCCTACATGCAGTACATGACTTTATACATTTTAGAGTGAAATCAATTTCATCAGAAAATATGCTACGGGATCTTTTACTGGCGAGTGTAAAATCTGAACAAAGAGTTACTAGAAATGAAAGTAAAATAACAGCAGATAATAGCAGTACAGGattaatgaatataaaacatgaaataaaagaaGAGGGTAATGAAGAATTTTCGGTTTTTGAAGCATCATATGAATATGTTGATGACATGAGTTTGttgatagttaaaaataataaagTTGCAGAACTAGCTGATGTTAAACCAAAGAGAAGCAGAAGAGTtgccaaaaaaaagaaaaattcaaaattggtACAAAAAATCCAAGAAGACGATCGGCTGCATTGTGGTATATGCCCAAAAACATTTGAAGATAGGAGTGCATTGAACAGTCATATAGATagtcacaaaaataataagcaaTGTTGTATTTGCTTAGAAAACTTTGACAACTGGTTGCAATTGCTCCCGCATAGACTGGCTCATGTCCCTGAGAAGCAGAAAAAGTGTCACCTTTGTTTAAAAAGATTTTGTGAACCCCCTTATTTAGAATATCACTATGTGAAAATTCATTTTGGAGGgACTCCTAAGTTAGCATGCAAGGACTGTCCGAAAACATATGAAAATCCtaggaaattaaaaaatcatcggTGGAGTGTGCACCAAGCGCTCAAGTATTTTTGTGACTTCTGCAACAAAGGatTTGGTGTTAAATCCACTCTTAGGTCGCACCTTAGAAAACATAATGAAAAGAAAGAATTTGCATGCGACTTATGCGAATATTCATCGAGACAACAATTGGGACTCAAGgaGCACAAAATAAGGAAACATTCCGCCTTCAAAATGTATTGCAAAAATTGTCAAAGGGTGTTCGAGTCTCAGGAAGTCTATGATAagcataaatgtaaaaaattaccATTTGTCGTATGTCCTATTTGTGGAGTGCATCAACTAAGTAAAAATTTGAATAAGCATCTTGAAAGACACAGTGACGTCAGCAAGTACGTATGTAACCGATGTCCAGCAAAGTTCAAAACCCAAGGCGGTCTTAAAGCTCACCTGGATAGACACGATGGCAACCGCACCAAGGAATGTGAATTCTGCCACGCCAAGTTTTATACCGGATCTGTACTTATTAAACACCGACGCACGCATACAGGTGAGAAACCTTATGTGTGCAAAATCTGCAACAAGGCGTTTACAGGCAATCACAACCTCAAAGTTCATATGAGAGTACATGGcgagtatttaataaataaaagagataAAATAGCTGAGAGCTAG
- Protein Sequence
- MEMCRACLSTKEKLVPLDETFITSYNLLTNLNISTLDNMPQYSCENCLHAVHDFIHFRVKSISSENMLRDLLLASVKSEQRVTRNESKITADNSSTGLMNIKHEIKEEGNEEFSVFEASYEYVDDMSLLIVKNNKVAELADVKPKRSRRVAKKKKNSKLVQKIQEDDRLHCGICPKTFEDRSALNSHIDSHKNNKQCCICLENFDNWLQLLPHRLAHVPEKQKKCHLCLKRFCEPPYLEYHYVKIHFGGTPKLACKDCPKTYENPRKLKNHRWSVHQALKYFCDFCNKGFGVKSTLRSHLRKHNEKKEFACDLCEYSSRQQLGLKEHKIRKHSAFKMYCKNCQRVFESQEVYDKHKCKKLPFVVCPICGVHQLSKNLNKHLERHSDVSKYVCNRCPAKFKTQGGLKAHLDRHDGNRTKECEFCHAKFYTGSVLIKHRRTHTGEKPYVCKICNKAFTGNHNLKVHMRVHGEYLINKRDKIAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -