Tflu023147.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578238.1:4141760-4148872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00066 0.051 14.7 1.9 1 23 268 290 268 290 0.99 2 13 0.012 0.89 10.8 2.0 1 23 298 321 298 321 0.94 3 13 0.7 54 5.2 0.4 1 23 325 348 325 348 0.92 4 13 0.0027 0.21 12.8 2.2 1 23 423 445 423 445 0.99 5 13 0.028 2.2 9.6 3.5 2 23 454 476 453 476 0.96 6 13 0.28 22 6.5 2.5 1 23 480 502 480 502 0.97 7 13 2.6e-05 0.002 19.2 0.5 1 23 507 530 507 530 0.98 8 13 2.6 2e+02 3.4 1.3 3 22 536 555 535 557 0.76 9 13 1.8 1.4e+02 4.0 0.2 2 20 581 599 580 601 0.90 10 13 0.3 23 6.4 0.2 2 23 665 687 664 687 0.93 11 13 3.5e-06 0.00027 21.9 1.2 1 23 696 718 696 718 0.98 12 13 5.4e-05 0.0042 18.2 0.8 1 23 724 746 724 746 0.97 13 13 5.9e-06 0.00045 21.2 2.6 1 23 752 775 752 775 0.98
Sequence Information
- Coding Sequence
- ATGCTAGTTTTAAAAGCATGTACAGTGTGTTTTAGCACTGATGTGAAATTATTTAGTATGAACAATTCCAATTTGAGGCAGGAATTCAATTTAGTTTCGGGACTCCAgtcGTATTTAGGTAATGGAATGCCAGAATACTTATGTGTGATATGTACAGCATACATAAAACGCTGTGTAAAATTTCGTGATAAATGTCAGCGCGCCCAGTACGCCTTGCAAGAATTATTAAGACAAAATAAAgagaTAAAGAAATCCAGTCTAAAAGCTTTTGATCGTGAAAGCATAGGCATAGCACCCAATTTATCCTATATAAATTTAGATAAGTGTCATTACGAGCAGGTGAAATTTCACTGGATCAAACATAATCGCTTAAATGTTACCGAAAGAGATGCAATCCCAATCGCTCACTACAGTACATTCACTAAGGTGGACTCATTTCAAGTGCCTGCGTCAGATCATATTATTAATGGAAATAATGTTAAAGTAGAAGAAGATAATGTAGTTTATGATGAAACTGCCGCATTTGATAATATCACCACTAAGGTGGAGAATATTTTTGCACAGTCTACATCAAGTATCCAGGATATAGAAGTGCAGATTGATGCTGATTTCATGGACAATGATGACAATTACAGTGACAATGAACTTGTTACAGAAGTTGAAAATAAAGATGAAAGGGACATAGACAAAGAGAAGGTGGATGGTACAGATTTAGATGTAGAATATGCTAGTTTATATCCGATATCTAAGAGAGAAGCCAAGGCAGCTGTTGAGGTGTACAAATTGTTCACTAATGGTAAATTTAAATGTGAAGTTTGtaataaatcatataataatgaGCTACGAATGAAGACTCATTTAAGGATGCATGACAAGTATGTAAGCGGCATGTTCAATTGTGATATATGCAACTATTATTACAAAACAGATTTCTTACTGAAGACCCACATGACAGAGAAGCATATGTACAAGTATGTGTGTAGGAAGTGTCCTGAAGTTAGTTTCGATCGTACATCAGCAAAACAACACTACATATGGTATCACTTGCAAAATGGTAGAAAGAAACACGCCAATTGGTATGAAACTCGCCCCAAATGGCTTAACTCTAGGGGTGGCAAGAGAGTTAAGGGTGTGGTTACACTGCGACCTGTGAGAAAGCTACCCAAACTACCTGAAGACTTCCTAGTTTACACTCCAATCAGTCAAGACGAACAATATAAGATTGTATTAGAAAGGCAGAATAGTAGGAACTACATGGAGTCAAATTTCAAGTGTGAAATGTGCTTTAGAGGATTCCGCgagataggtacttatagtaAACATATGAAGAAACATGATCCGGCCATCTCTGGCAAGCTCCAGTGTGATATGTGCAAGCTTTACTTCAGGGATCACAGGAAAATGTATAAACACATGAATATTACGCATCTCTTCAAATATGCCTGTCAGGTGTGCAGCTTCGTGTGTTATAACAAGGGTCAAGCTCAAATGCACTACAGGTTTCATAAGAATGTGAAGTATCCGTGTCCGCAATGTGATAAAGAGTTCACGAAGGCGTCAACTCAACTGACTCACATAAGAATGAAGCATCCGTCTACGAATATCTGCGACCTCTGCGGGCACAGCTTCGTCAGCGACAACGGCTTATATTGTCATAAGCAGATAGCTCACACTGAAGAGGAACGTCAGCTGAGTGCGTCGACCGCGGCGGCGACCGCGTTGGACTCCAGCGACCCGTGCTACTGCGCCGAGTGCGGCGTGCGCTTCCTGTCCAACGACGCCTTCGTCACGCACCTGGGCAGCTCCAACAAGCACGCCACTACTAACCTATCGTCAAAGCCGCACCGTCGCAAGTCTCTAGCGGGCGAGGcgggtggtggtggtggtggtggcggTAGTGGTGGTGACGTCGGTGGCGGGGCCAAGCGGCGCGGCCGCCCGCCGCGCTGCGTGCGGAGTGACGTCATCAATAACGGCGCTTCTACTGCAACCACTTGTGAACTGTGCGGCAAGTTCCTGGTGAACGACGTGCAGGCTCGCAAGCACTACACCGTGGAGCACCCCGGCGCCGACTACCTCAAGCGGTACATGTGCGACGTCTGCGGACACACTACACGGCAATACGCAAACCTGATGGTGCACATGCGCACGCACACTAACGAGAAGCCGTACGAGTGTCCGCACTGCGACCGCCGGTTCAGCATGCCCAGCAACCGGGACCGACACCTCGTGGTCCACACTGGCGAAAAACGCTACCAATGCCAGCACTGTAACCGTCGCTTCACTCAAAGCAGCGCTGTTAAGCTACACATACAGACTGTCCACTTAAAGATACCATACGCACCTTGGGACAAAAAGAATCGGAAACGACGTAAAGAACTGGAAGGTACATCCGCACCGGTAAGCGCAGTCAGCGCTGTTAACAACTGCTTGCAGCAGCCGCATAAACTAGTGTTAGACGCTCAAGGGGACTATTTAAACGCGTATATCACGTATAATGACGAATGA
- Protein Sequence
- MLVLKACTVCFSTDVKLFSMNNSNLRQEFNLVSGLQSYLGNGMPEYLCVICTAYIKRCVKFRDKCQRAQYALQELLRQNKEIKKSSLKAFDRESIGIAPNLSYINLDKCHYEQVKFHWIKHNRLNVTERDAIPIAHYSTFTKVDSFQVPASDHIINGNNVKVEEDNVVYDETAAFDNITTKVENIFAQSTSSIQDIEVQIDADFMDNDDNYSDNELVTEVENKDERDIDKEKVDGTDLDVEYASLYPISKREAKAAVEVYKLFTNGKFKCEVCNKSYNNELRMKTHLRMHDKYVSGMFNCDICNYYYKTDFLLKTHMTEKHMYKYVCRKCPEVSFDRTSAKQHYIWYHLQNGRKKHANWYETRPKWLNSRGGKRVKGVVTLRPVRKLPKLPEDFLVYTPISQDEQYKIVLERQNSRNYMESNFKCEMCFRGFREIGTYSKHMKKHDPAISGKLQCDMCKLYFRDHRKMYKHMNITHLFKYACQVCSFVCYNKGQAQMHYRFHKNVKYPCPQCDKEFTKASTQLTHIRMKHPSTNICDLCGHSFVSDNGLYCHKQIAHTEEERQLSASTAAATALDSSDPCYCAECGVRFLSNDAFVTHLGSSNKHATTNLSSKPHRRKSLAGEAGGGGGGGGSGGDVGGGAKRRGRPPRCVRSDVINNGASTATTCELCGKFLVNDVQARKHYTVEHPGADYLKRYMCDVCGHTTRQYANLMVHMRTHTNEKPYECPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSAVSAVNNCLQQPHKLVLDAQGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00762008;
- 90% Identity
- iTF_01252181;
- 80% Identity
- -