Tflu026261.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578244.1:4907891-4917214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0052 0.41 11.9 1.1 1 23 328 350 328 350 0.97 2 12 0.071 5.4 8.4 4.7 1 23 357 379 357 379 0.94 3 12 0.68 52 5.3 2.9 1 23 383 405 383 405 0.88 4 12 0.00061 0.047 14.9 3.2 1 23 410 433 410 433 0.97 5 12 0.31 24 6.3 0.1 2 19 441 458 440 463 0.88 6 12 7 5.4e+02 2.1 4.2 2 20 472 490 471 492 0.90 7 12 0.079 6.1 8.2 0.1 2 19 502 519 501 521 0.93 8 12 2.2e-06 0.00017 22.6 1.8 1 23 533 555 533 555 0.98 9 12 0.0021 0.16 13.1 1.4 2 23 601 623 600 623 0.93 10 12 6.5e-07 5e-05 24.2 1.6 1 23 629 651 629 651 0.98 11 12 0.00061 0.047 14.8 2.1 1 23 657 679 657 679 0.98 12 12 1.9e-06 0.00015 22.7 0.5 1 23 685 708 685 708 0.98
Sequence Information
- Coding Sequence
- ATGGCTCACGTACCTCTACGAGTATGTCGAGGATGTCTCGCTACGGACGCTCGATTATACGAAATGCGCCAGAACCGTCTGATGGAAGCCTATTCCACATTACTGAATACTGAAGTACAAGTAACAGATGACCTGCCACATTACTTGTGCAGCTACTGCGCTGCACTCCTGCTCAAGTGTGACACATTCAGAAATAAGTGCATTGAAGCTCTATTTGTATTCAGAAATGCACAActtaacaatattaatcttACTAAAGAACATATAAGAAAAATAGAGCAGCATACACAATTCAGAAAATCTGATTGTGAAATTATTGATCTTGTATCAAATTCAGTAGATTCACATTTAGATTTTAATGATACAACTCTAATACAAGAACATAATGTTGCAAATATAACGGCAGATACAGATATATCATCAGATTCTGATGAATCTATAGattgtaataaattacttaaaagtaaaaacaaagttACATCAACAAAAACATGTCGGGAAGATAAAGTTTTAAAACCGACAGCATTATCAGTAGATGAAATAGTTGTAAATACTAAAAAGGTATCTGAAAATGATAGAGTGGTAAAGACTACTGATATTATGACACCTGTAGATACTCTTTATGAAGTAGAAATTATTGTTGATTCTGAAAATACGGACAGTGCTTTGATATCTGATAAAATTAGTACTTCAGATGAAAATGTTACAATCAAAGATATTACAATAGAGTTAGAAGACGATACAAACCAAGATGTCACTATAGATTCAAATATAAGtatgaaaagtaaaataaatcattgGCTTAATTGTAATAGCAAGAATTATATGAGTGGAGTACTTAAAGGAAAATCAAAGAAGAAAGTTAAATTTTCAAATGAATACTATGCAATGTTTAATACAgaagttaaatatttaagtagagAGGAACAATTGAAAGAAGTTGAGAATAGAAAAGAATCTGATAATTATAAACAGGTTGATTTTAAATGTATGCTCTGCTACAAAGGATTTTATGTTGAagatacatttaaaaatcaCATGGCACTACATGACGATATCAGCGGCAAGTTCATTTGTGACATCTGTCAGTGTCACTTTATGAGTAAACAGAGTCTACAGAGCCACAAGACTGCTCACAGTAGAGTGTTTACATGCAAGGAATGCGGACATACAACAAAACATGGTACTTTAGCAATCCAGCACAGTAAATGGCACACGGGGAAGAAATATTCATGTCTTGATTGCGGAAAAGAGTTCCGAAATAAATCGAGTAAATACGGACATATCAAGATGTGTCACCCGACCAGTGACCAGCTAGTGCGGTGCGAGATCTGTGGGGACTCCTTCAATGGACTAGCGGGGCTCCAATCACACGACAAAAGGGCACATAAAGAGATGTACTCACCGGAGTGTCACTGTTCTGGTTGTGACACTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCAAGGAACCGACGGACTGTGCGACACTACATACAAGTATTGTGTGCGCTGCGGTATGTCGTTTGAGACTGAACAGCTGCTGAAGGAACATGAGATAGAACAACGGAAACTAGGTGGAAGTATTACTACATTTAAATGTGACGTGTGTCAAAAAGTCTTTGcaaatttttcaaattataaatcCCACCAACGTTGGCACCAACCATCTTTTGCGGAATGGCGCAAGTCGTACGAGAGGAAGAGGGCTCGTGTGTGCCTCGACAGAGACCCCGGGGGAGGGGCCGGAGGCGGGGCCGGGCCAGGGGGCGGGGGCGGAGCAGGGGGCGGGGGGCTCGTGTGCGAGCTGTGCGGGAAGGTCTCCAAAAGTAAAGGTGCTCTACAATTACACCACCACAACATGCATTCAAATGAACGACCATTTTCCTGCTCAGACTGTACGAAGACATTCAAAACTGCAATGAATTTAAAGGTACACACTCGCGTACACACGGGAGAGCGCCCGTTCCAGTGCGATCGCTGTCCGAAGGCGTTTCAGTGTCGTTCGAATCTTGTTAGACATCAATTAGTACACACTGGGGAGCGTCCGTACTCATGTAACATATGTGGTAAGACCTTCAATGATATGTCGTACATCAAGATTCACATAAAAACTGTACACATGAAGGTACCCATGCCGCCCAGGGTACGACGAAGCCGGCGGAACAAGAAAACTGATTGA
- Protein Sequence
- MAHVPLRVCRGCLATDARLYEMRQNRLMEAYSTLLNTEVQVTDDLPHYLCSYCAALLLKCDTFRNKCIEALFVFRNAQLNNINLTKEHIRKIEQHTQFRKSDCEIIDLVSNSVDSHLDFNDTTLIQEHNVANITADTDISSDSDESIDCNKLLKSKNKVTSTKTCREDKVLKPTALSVDEIVVNTKKVSENDRVVKTTDIMTPVDTLYEVEIIVDSENTDSALISDKISTSDENVTIKDITIELEDDTNQDVTIDSNISMKSKINHWLNCNSKNYMSGVLKGKSKKKVKFSNEYYAMFNTEVKYLSREEQLKEVENRKESDNYKQVDFKCMLCYKGFYVEDTFKNHMALHDDISGKFICDICQCHFMSKQSLQSHKTAHSRVFTCKECGHTTKHGTLAIQHSKWHTGKKYSCLDCGKEFRNKSSKYGHIKMCHPTSDQLVRCEICGDSFNGLAGLQSHDKRAHKEMYSPECHCSGCDTQFYCSDAFKAHQGTDGLCDTTYKYCVRCGMSFETEQLLKEHEIEQRKLGGSITTFKCDVCQKVFANFSNYKSHQRWHQPSFAEWRKSYERKRARVCLDRDPGGGAGGGAGPGGGGGAGGGGLVCELCGKVSKSKGALQLHHHNMHSNERPFSCSDCTKTFKTAMNLKVHTRVHTGERPFQCDRCPKAFQCRSNLVRHQLVHTGERPYSCNICGKTFNDMSYIKIHIKTVHMKVPMPPRVRRSRRNKKTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -