Tflu024104.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578240.1:6588490-6592081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1e-05 0.00086 20.3 0.8 2 23 216 237 215 237 0.97 2 16 0.00036 0.028 15.6 1.6 3 23 269 290 267 290 0.95 3 16 0.003 0.23 12.7 1.5 2 23 349 371 349 371 0.96 4 16 0.0003 0.023 15.8 0.9 1 23 377 400 377 400 0.94 5 16 0.35 27 6.2 0.6 1 15 404 418 404 424 0.84 6 16 0.017 1.3 10.3 2.2 1 21 433 453 433 456 0.94 7 16 5.5 4.2e+02 2.4 0.4 1 23 461 484 461 484 0.90 8 16 0.00039 0.03 15.4 0.2 2 23 497 518 496 518 0.97 9 16 0.0025 0.19 12.9 0.8 1 23 524 546 524 546 0.98 10 16 0.15 12 7.3 0.1 2 23 552 572 551 572 0.94 11 16 0.00072 0.056 14.6 1.0 2 23 580 601 579 601 0.97 12 16 0.12 9.4 7.6 0.1 2 23 606 626 605 626 0.94 13 16 5.7e-05 0.0044 18.1 3.1 1 23 673 695 673 695 0.98 14 16 8.4e-06 0.00065 20.7 1.2 2 23 702 723 701 723 0.97 15 16 0.0012 0.094 13.9 0.5 1 23 729 752 729 752 0.93 16 16 0.15 12 7.3 1.1 2 23 758 780 758 780 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAACTTGAATGTAATGAAAACTGTTCAAATCCTATAAATCTAGATGATATaaggcataaaataaataatattataaacttgaaGCATTATTGTGGAATATGTTTAGAGGATAGTAAAAACATGTCTTCCATAGATGAAGACTTGGAAATAATTGTACTGCAATGTACACAGAGTGTTTCTCTGAAGAATGTTatttacaaagtattttttgatAATCCACACATCTTATGCAGTAGCACCATATGCAGTGACTGTATAACTAAGTTACTTCAATGTtacattttcatacaaaatactgAAACTGTAACAATAACTATGAAAacatatataaatgatttaaacaagaAGTTAGTTGATATAAATGATCATTTTGCAAACACCACAGATATTGGCAGCTCGAACATTGTTATTATGTTAGAAAATGCTGAAATAGACAGTCAAATTCCTTTAGAAAATATAGAAGTTGATGCAAAGTATATGACAAATAATAAGATTGCTGTAAATAATGTTTCAACAAATACAACACTAAAGAAAGATGTAAATGAAGACTCATTCCAATGTGTTGATTGCAATATTTTACTACCCACTTTTCAAGCTTGGATAAAACATGACAACAAATATCATAGAAATGAAAAACTTGAATGCAAAATATGCTACAAGTCCTTCAAAACTCAACAGTATTTAGTGGCACATTATAAAGTGCATGCAAAAGTGATATGCAAGATTTGTCAGCAAATTATTTCTGATACAGAACTAATTGACCATTTGAAAGAATGCCATATAGAAACTGCAcatttatgtaatatttgtaaTGAAGCATTTTATTCTGCAAAAGCACTAGAGACACATATAAAAATCTGTCACGAAAATATTATCGCAAGCAATAAATGTGTTATGTGCTTAAAAAGTTTTAAGGAAGACAGGTTAAAAGCACATAATTGTAAATTCAACTGTCCAGAATGTTCCGAAATGCCTTGCATCCATTATAGATACTTAATGTTTTACAGAGAGCAAATCCTGAACCATGCAAGTAGAGCAAAATGCTTAGACTGCGATTATGTCTGCCGTAAGAAGGATAACTTATTGGGACATGTAAATCGTGATCATTTGGAATATCATCCATATACTTGTGACATATGTGCTCAGCAGTTTTATTCAAAATCCTTATTAAAAGCTCACATTTATCAATTtcatttagataattttatgtGTGAATTTTGTGATACCAAATTTAATAGCAAAGAAGCCCATGAGAATCATGAAGCAAGCTGTAAATTGATCACAAGAGAATTTATATGTGATGAATGTACAGCAACTTTTGATGGTAAAGAACAATTGATGAAACACAAAAGATGTAGACATAGCAAGGAAATATATCCATGTGGCTTATGCAGTAAGAAATTGCTAACAGAATCTAAAAGAAAAGAACATATGGTGAAAGTTCATAATGGTATCCAAATAAAGAATCGACGGTTGAACGTAAAATGTGTTATTTGCGAAGACAAATTTGATACTAAAGGTGAATTGGTTCAACATATGCGCACGCACGGACCTAATGTTAAGTATCCTTGTAGAATATGTAATACAGAGTATGAGAGCTTAAGAAAACTTAGAGCTCACAGTAGAAAACATATTGGTCCATTTGTAGTTTGTGAAATATGCGGGAAAGAGATGAGACAAGTTTTACTTGATAAGCATATGGCCAACCATGCATCCATGGGTGAAATAGTTACTTGTAATACTTGCGGAAAGAGTTTCCTAAATATAACACAGTTAAAATACCATCAGAAAGTCCATTTGGTTAGTGTCCCTTGTCCGAAATGTAAGAAGCTAATCAACCCGGCAAAATTAAGGAGACATTGGCGAGGACATTTGATAGATGAAGACCCGAAAttaaaagaaagtaaaaaacaGAGAGCGCATCTTAAATGTGAGTTGTGTGATTATATGACGTGGAACAATATACTATTAGAATGCCATATGAATAGACATCATTTAAAGATAAAGCCTTACATTTGTCATATATGCAGTAAAGATTTCATCGGGAAACATTTGTTGAAGAAACATATAGAAACTCATAATGATGAGAAGAGTGTTAAATGTATGATTTGTGGTAAGAGTTTTGCGAATTCAGCATGTTTGAAGATGCATTTAAGACTGCATACAGGCGAAACTCCTTATCCTTGTAATATTTGCGGAGAAAGATTTAGGTCCTCGAGTATAATGAATGTGCATAAACTGAAGAAGCATTCAGAACGTAGTAATACATGCCCGCTTTGTCCCAGCAAGTTTCATACAATAAGAGATATGAGGAGGCATGTAATAAAAGTGCattggaaacaaaaaaataagagaTTTGATCCGCGCGAACTGAAAGGATTACATGAAGAACATTATCATTTATTTCATGACGGTAGAAGAGTTAAAATTCATGAGAAAGAAGTTGATTTTTTCAAGTGTTGTACTATTAATGTACATGAATAA
- Protein Sequence
- MEELECNENCSNPINLDDIRHKINNIINLKHYCGICLEDSKNMSSIDEDLEIIVLQCTQSVSLKNVIYKVFFDNPHILCSSTICSDCITKLLQCYIFIQNTETVTITMKTYINDLNKKLVDINDHFANTTDIGSSNIVIMLENAEIDSQIPLENIEVDAKYMTNNKIAVNNVSTNTTLKKDVNEDSFQCVDCNILLPTFQAWIKHDNKYHRNEKLECKICYKSFKTQQYLVAHYKVHAKVICKICQQIISDTELIDHLKECHIETAHLCNICNEAFYSAKALETHIKICHENIIASNKCVMCLKSFKEDRLKAHNCKFNCPECSEMPCIHYRYLMFYREQILNHASRAKCLDCDYVCRKKDNLLGHVNRDHLEYHPYTCDICAQQFYSKSLLKAHIYQFHLDNFMCEFCDTKFNSKEAHENHEASCKLITREFICDECTATFDGKEQLMKHKRCRHSKEIYPCGLCSKKLLTESKRKEHMVKVHNGIQIKNRRLNVKCVICEDKFDTKGELVQHMRTHGPNVKYPCRICNTEYESLRKLRAHSRKHIGPFVVCEICGKEMRQVLLDKHMANHASMGEIVTCNTCGKSFLNITQLKYHQKVHLVSVPCPKCKKLINPAKLRRHWRGHLIDEDPKLKESKKQRAHLKCELCDYMTWNNILLECHMNRHHLKIKPYICHICSKDFIGKHLLKKHIETHNDEKSVKCMICGKSFANSACLKMHLRLHTGETPYPCNICGERFRSSSIMNVHKLKKHSERSNTCPLCPSKFHTIRDMRRHVIKVHWKQKNKRFDPRELKGLHEEHYHLFHDGRRVKIHEKEVDFFKCCTINVHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -