Tflu014623.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578226.1:1419532-1423923[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0013 0.097 13.9 0.9 3 23 44 64 42 64 0.97 2 14 0.0039 0.3 12.3 3.3 1 23 102 125 102 125 0.95 3 14 0.00029 0.023 15.8 1.6 1 23 127 149 127 149 0.97 4 14 0.00014 0.011 16.8 0.1 1 23 185 207 185 207 0.98 5 14 2 1.5e+02 3.8 1.8 3 23 237 258 236 258 0.96 6 14 0.3 23 6.4 2.4 1 19 265 283 265 285 0.82 7 14 2.6e-05 0.002 19.2 0.1 1 23 293 316 293 316 0.92 8 14 0.00052 0.04 15.1 0.8 1 23 325 348 325 348 0.97 9 14 0.00041 0.032 15.4 0.1 2 23 354 377 353 377 0.97 10 14 0.16 12 7.2 2.2 2 23 384 405 383 405 0.95 11 14 0.0011 0.085 14.0 1.0 1 20 410 429 410 432 0.95 12 14 0.0017 0.13 13.5 1.5 1 23 438 460 438 460 0.97 13 14 6.9e-05 0.0053 17.8 1.6 1 23 466 488 466 488 0.96 14 14 3e-05 0.0023 19.0 2.5 1 23 494 517 494 517 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCTCCCTCCCACATGGACCCCGTCGGAGCGCCTTACCCGTACCCCGTCGGAGCGCCGTACCCGGACCTGAATAATATCCCGGGCCTGAAACGTACCACTATTGATTTAGTCGGTggtattttttgtaacatttgCCGTTTAACATTTGCGAATAAGAAAGAATATGAAAGTCATTACTTGAAGCACAATACAGGCAATGCAGACATCATTTACACATGCGTTGCATGCCATAAGGAGATAGTGGGGTACCCCAGCTTCCGGGGACACTGCTACCTCAACCATGTTGCTAAAGATAAACACAAATGTGTATACTGCAGCAAGACTTACTCAAAATGTTCAGTACTAGAAAGCCATATCAATGCCGTTCATACATTCAAATGTATCAAATGCAAGAAACAgtTCTCATCAAAAACAGAATTGCAAGTTCATCTTTTAATTCACAAGAACGAAAAGAACTCTCCACCATACGAATGTAGCTTGTGCTGCAAGAATATAGACAGCATGGATATGTGCGAATTGCATATTGACGAACACTGCAGTGTCACGTATCCATGCCCAATATGTACCATGACATTTACAGATAAAAATGATGCAACATCACACCTTTCCATTcattttggcagtgtacttaCTGATTATGATTTCATAGAGCCGAAGATAGCTAAAGAAGACTGCTCCATAGACATACTCGGTGGCATATTGTGCTGTTACTGTGACAACTTGTTCAAAAACAGACCAGAGTTTGATGCCCACTTCTCAACCGAACACTCTGGCAAAGAAATTGTGTACTCATGTAATATTTGTGGGAAGAAATATGAGAAATATGTAATGTTTGGCAACCACTGCTACTTTCACATAGCCAAAGATCGATTTGAATGTGAGGAATGTGACAAGACCTTCCCTCGTCTCTCACTGCTGGTCATCCACACAGAAGCCTTCCACTCAGGCAAGCCTGCAGACAAGCCGTTCACCTGCGTGAAATGTGACCATGGCTTCAAGACTGCTCCTCGTTTGCGGGAGCATCTCCGCATTGTTCATGACCTGCATTGCATCAAGTGTCCAGAATTTGGGTGTGAGATGAcATTCGAATCACCAAAAGATCTGATCCTCCACCAGAGGAATCACAAAATGGTCGACAACATTTCATGTCGTCATTGCAGTCTACCATTCACTACCCTGTCGGCCTGCGAGAGACATCTTGATGTACACAGAAAATCATTATACATATGCCCTATTTGCAATAAAGAGTACAGAGAGAAATTCACCCTGCTCAAGCATATACCACATCATTTCGAATCAGTGCTGCATATATGCAAAATCTGTGGCAAAGCATACAACATTAGGTCCCGTCTTGTTCAACATTCTAAGACGCATTCAGACTTGAGAACTCATATATGCAGCCTCTGTGGCAAAGGATTCATGAAACCACACGAGTTGCAACAACATCTCAACGTACATACAGGCCTGAAGCCGTACAAATGTATGCATTGCCCGAAGACATTCGCCAACTACCCGAATTGGTCGAAACATTTACGCCGAATGCATAACATTATACAGGATAAGAAAACTATTAAATCGCAACAAAATCATGTTGAGCTGAAGAAAGATattgtaaatgttttgaatgatAATTTGATCGATAAGAAAATGATCATGAAGCCACAGAATATGCATGAAGAAAATAACGAGTATTTAACAGTTTTGAAAAATATGCCGGATAACAATATTGTTAATAGTGATGTTGCATCGATTATAGAGTCTGGTTTCGATTCGATGAGCTCTGAGATGTCAATGGGTACATATCGCTTTGTCGAATCCGATGAGAGTACAATGGACGGCATAGATCCCATTGTTATACAGAAAGAGTGGCAGATGTTGAACGAAAGTGTTTCTGCGACTAATATTCTCGAATTGTCTAATTTGATGCCGCTCACCAACACGCCGACGTTTGATTCtcATGACATGCCTCAAAACACATCGATCATGGAGCCAACGCCATCCTTCCAAACAGTTGGCTACCCGCCCGAATACGGACCCGACTTCATAAACCGAGGTATCGAAACATCCACATTCAATGGGGATCTAATCGACCTCGATGACCACATCCTACCACATATCGACCCGCTACTTACCATAAGAAACGAAGAAACGCCGACAAAAATGTACGTAGACACACTACATAATGTTGATTTCGAAAACTACGACCACAACGTCGTAACTAACACATACGAAATGCAAAATACTTGGGAACCACCTATTATAACAAAGGTTTACCAAAATTACACATACCACGAGGAACTAGCAGAGGTTAATAGATTATCCATTATGAATACAGATATTTTTTAg
- Protein Sequence
- MASPSHMDPVGAPYPYPVGAPYPDLNNIPGLKRTTIDLVGGIFCNICRLTFANKKEYESHYLKHNTGNADIIYTCVACHKEIVGYPSFRGHCYLNHVAKDKHKCVYCSKTYSKCSVLESHINAVHTFKCIKCKKQFSSKTELQVHLLIHKNEKNSPPYECSLCCKNIDSMDMCELHIDEHCSVTYPCPICTMTFTDKNDATSHLSIHFGSVLTDYDFIEPKIAKEDCSIDILGGILCCYCDNLFKNRPEFDAHFSTEHSGKEIVYSCNICGKKYEKYVMFGNHCYFHIAKDRFECEECDKTFPRLSLLVIHTEAFHSGKPADKPFTCVKCDHGFKTAPRLREHLRIVHDLHCIKCPEFGCEMTFESPKDLILHQRNHKMVDNISCRHCSLPFTTLSACERHLDVHRKSLYICPICNKEYREKFTLLKHIPHHFESVLHICKICGKAYNIRSRLVQHSKTHSDLRTHICSLCGKGFMKPHELQQHLNVHTGLKPYKCMHCPKTFANYPNWSKHLRRMHNIIQDKKTIKSQQNHVELKKDIVNVLNDNLIDKKMIMKPQNMHEENNEYLTVLKNMPDNNIVNSDVASIIESGFDSMSSEMSMGTYRFVESDESTMDGIDPIVIQKEWQMLNESVSATNILELSNLMPLTNTPTFDSHDMPQNTSIMEPTPSFQTVGYPPEYGPDFINRGIETSTFNGDLIDLDDHILPHIDPLLTIRNEETPTKMYVDTLHNVDFENYDHNVVTNTYEMQNTWEPPIITKVYQNYTYHEELAEVNRLSIMNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416122;
- 90% Identity
- -
- 80% Identity
- -