Tflu024908.2
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578242.1:2314254-2317005[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 2 9.7 0.3 1 22 35 56 35 58 0.88 2 18 0.023 1.8 9.9 3.2 2 23 85 107 84 107 0.95 3 18 3.3 2.6e+02 3.1 6.0 1 23 129 151 129 151 0.98 4 18 0.0073 0.57 11.5 1.0 1 19 155 173 155 177 0.96 5 18 0.004 0.31 12.3 0.1 1 23 182 205 182 205 0.97 6 18 0.2 16 6.9 4.7 2 23 213 235 212 235 0.92 7 18 0.00049 0.038 15.2 1.0 2 23 241 263 240 263 0.96 8 18 0.00075 0.058 14.6 1.5 1 23 269 291 269 291 0.98 9 18 0.0021 0.16 13.2 1.1 1 23 361 384 361 384 0.94 10 18 1.5 1.2e+02 4.2 0.1 2 23 411 433 410 433 0.94 11 18 0.33 25 6.3 4.0 2 23 456 477 455 477 0.96 12 18 0.012 0.9 10.8 0.1 1 23 481 503 481 503 0.94 13 18 0.15 11 7.3 2.3 3 23 510 531 508 531 0.95 14 18 0.016 1.2 10.4 0.6 2 23 539 561 538 561 0.91 15 18 0.00017 0.013 16.6 1.1 2 23 569 591 569 591 0.97 16 18 0.0018 0.14 13.4 2.0 1 23 597 619 597 619 0.96 17 18 1e-05 0.00081 20.4 1.5 1 23 625 647 625 647 0.99 18 18 6e-05 0.0047 18.0 5.2 1 23 653 676 653 676 0.98
Sequence Information
- Coding Sequence
- ATGAATAGTAATAAACAAGAATTAATGAAGTGTCGTCATAACATCACACAAGTTCTGCAGTTCTCGAACGCTACACCGATCAGGCGACAAGACGGCATCGCATACTTATGTAGCTACTGCGATGAGAAGTATCAGCTGGCGGCAGACCTAAAAAAACACACCGTCGAATCTCATAAAGATGTCAAAACTGCTCTGTTCATGAAGGGAACGGACAGGCAGAAGTTTTATATAAAGTTAGACATCACAGAGCTACACTGTAAACTCTGTGGGAAAGAGATGACTTCACTAGAAAATCTGATGGAACACCTGAACAAATGTCACGAAAAGAGCTTGCATTATGACATAAAGAACCGAATGATGGCTTTTAAATTAGATAGCGATACATTTAGGTGTTGCATATGTTTCAGCACATACGACAGATTCAAAATGTTGCTGGTGCATTTGCATTCGCATTACAGCAATTACGTTTGTGAAACCTGCGGTGCTGGTTTTATCAAtccttattttttgtttaaacatGCCGACTGCCACAAATCAAGGAATTACGAATGTGACTTCTGCCCAGAAGTATTCGCTACTTACGGATTGAAGAGAGCTCACGGCAGAAAAGTACACTCGCAAGCGCCGATATCAACTAAGTGTGCCCATTGCAAAGAATCGTTCagagactatcggatgaaagaAAAACATCAACATGACGTCCATGGTGTTAAACCCGTCAAGTGTAAATCATGtgataaaacttttaaaacaacCAGAGCGCTGGGAGTTCATGTTAAACGTGACCATTTGATGGAAAGGCGGCACAGATGCGTGCAATGTGATATGCGGTTTTATGAAGCGGGCAAGTTGCGAATGCATATGTTGACGCATACAGGTAAACAGCAAATAAGTTCCATCAAAATTGAGATCGATGAATTAGAGGAAAGCGGTAGTGAAATATACGATGATAGCTTCAGACTAAAAGaagaaactaaacaaaaaactcCGCGGACTGAGCTAGTGAAACATCGGAGCAATATAAGAGAGATATTGACAAATTCTAACGCAACACCCATCCGACGCTATGGAGGCATTGGATACACATGTTGTTATTGCACGGAGCAGTACCCCGAGCCCGAAAATCTAAAGAAGCACACGTTGGAAGCCCACAACGATGTCACGCAAGCAAACTTCATGAAAAGTATGAACATGTCCGAATACGTTATCAAGTTGGACATCACTGCCCTGCGCTGTAACATCTGCCAAAACGACATTGGAACTTTAGAACAAATGATGCAACATTTGAAAATCGATCATGAGAAGAAGATATTTACCGATATCAAAAATCACATTATGCCATTTAAGTTCGTTGAGGAAACATTAAGATGCTTGTTTTGCTCTAGTTCTTTCAACAAATTCAGAATGCTTCTGAAGCACATGCACATCCATTACAGGAATTATATCTGCGATGTTTGCGACGTTGGTTTCATTAACCGCAACGGTCTTTCGCAGCATTCAGAAAACCATAAAACAGGTTCTTTCGGTTGTGATTACTGTGCCAAAGTTTTTACTACACACGTGAAGAAAAAACTACACGAAAGAAACAGTCATACCCATGTGGACTTATTGAATAAATGTGGATATTGCAACGAGACGTTCAAAGACTACAGGAAGAAGGAGGCTCATTTAGCTGAGATGCATGGAGTGCGGACGCAGACGCCCAAGTGTCAAGCTTGCGACAAAACATTTAGTAACCGTAAGGTGTTAAACATTCACATAAAGCGGGATCATTTGATGGAGCGACCTCACAGTTGTCCACAGTGTGACATGAAGTTCTTTTCGACAACAGGGTTGAAGAACCACATAGTGAAACACACGGGGTTGCGGGCGTTCCAATGTGAAGTTTGCATGAAGTCGTTTGGGAGGAAGAAGACTTTGAACTCTCATATGCGGATACATGATGATCACCGACGGTACAAGTGCGAGCACTGCGGGCAAACCTTCGTGCAAAAGTGCAGTTGGAGAGGACACATGCGGTCCAAACATGGAGAGATTGTTTGA
- Protein Sequence
- MNSNKQELMKCRHNITQVLQFSNATPIRRQDGIAYLCSYCDEKYQLAADLKKHTVESHKDVKTALFMKGTDRQKFYIKLDITELHCKLCGKEMTSLENLMEHLNKCHEKSLHYDIKNRMMAFKLDSDTFRCCICFSTYDRFKMLLVHLHSHYSNYVCETCGAGFINPYFLFKHADCHKSRNYECDFCPEVFATYGLKRAHGRKVHSQAPISTKCAHCKESFRDYRMKEKHQHDVHGVKPVKCKSCDKTFKTTRALGVHVKRDHLMERRHRCVQCDMRFYEAGKLRMHMLTHTGKQQISSIKIEIDELEESGSEIYDDSFRLKEETKQKTPRTELVKHRSNIREILTNSNATPIRRYGGIGYTCCYCTEQYPEPENLKKHTLEAHNDVTQANFMKSMNMSEYVIKLDITALRCNICQNDIGTLEQMMQHLKIDHEKKIFTDIKNHIMPFKFVEETLRCLFCSSSFNKFRMLLKHMHIHYRNYICDVCDVGFINRNGLSQHSENHKTGSFGCDYCAKVFTTHVKKKLHERNSHTHVDLLNKCGYCNETFKDYRKKEAHLAEMHGVRTQTPKCQACDKTFSNRKVLNIHIKRDHLMERPHSCPQCDMKFFSTTGLKNHIVKHTGLRAFQCEVCMKSFGRKKTLNSHMRIHDDHRRYKCEHCGQTFVQKCSWRGHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -